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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
197
DNase-seq
49
ChIP-seq
2
ATAC-seq
Assay category
199
DNA accessibility
49
DNA binding
Target of assay
histone
64
histone modification
49
transcription factor
36
broad histone mark
28
narrow histone mark
9
RNA binding protein
5
chromatin remodeller
1
other context
1
other post-translational modification
Date released
181
June, 2019
47
November, 2017
8
November, 2018
7
October, 2019
3
August, 2017
1
March, 2019
1
October, 2017
Available data
2049
bam
1761
bigWig
1122
tsv
1054
fastq
922
bed narrowPeak
632
bigBed narrowPeak
248
bed broadPeak
246
bigBed broadPeak
221
bed bed3+
161
txt
153
zippedFastqFolder
74
tagAlign
64
xls
33
bed bedMethyl
33
bigBed bedMethyl
23
hic
22
bedpe bed3+
8
csv
6
bed bed3
4
hdf5
4
tar
3
bed bedgraph
3
cool
2
ibed
1
bedpe
1
vcf
Organism
248
Homo sapiens
Biosample type
176
tissue
45
cell line
27
primary cell
Organ
78
kidney
49
liver
36
limb
35
brain
33
musculature of body
30
heart
18
epithelium
18
ureter
13
vasculature
10
blood vessel
connective tissue
9
pancreas
4
artery
4
eye
2
adipose tissue
2
nerve
2
vein
1
spleen
Project
248
AMP
Genome assembly (visualization)
233
GRCh38
225
hg19
Lab
246
AMP-T2D consortium
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
3
inconsistent ontology term
Audit category:
2
inconsistent control read length
organ_slims!
connective tissue
target.investigated_as!
histone
BIOSAMPLE
ASSAY
248 results
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Clear Filters
DNase-seq
ChIP-seq
ATAC-seq
tissue
heart
18
muscle of arm
17
brain
14
kidney
13
muscle of leg
13
+ See 39 more…
cell line
HepG2
44
Panc1
1
primary cell
skeletal muscle myoblast
1
2
astrocyte of the cerebellum
1
1
brain microvascular endothelial cell
1
1
choroid plexus epithelial cell
1
1
endothelial cell of umbilical vein
2
+ See 14 more…
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