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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
31
total RNA-seq
15
small RNA-seq
14
RRBS
12
WGBS
7
Hi-C
6
ATAC-seq
3
single cell RNA-seq
2
FAIRE-seq
Assay category
49
Transcription
26
DNA methylation
8
DNA accessibility
7
3D chromatin structure
Target of assay
3
control
Date released
318
November, 2017
314
May, 2020
294
August, 2021
260
February, 2021
257
May, 2021
200
May, 2022
191
February, 2023
189
June, 2019
166
July, 2018
157
August, 2017
115
October, 2019
90
July, 2019
87
November, 2018
63
December, 2017
59
March, 2020
59
September, 2020
50
November, 2019
47
April, 2018
47
September, 2023
41
September, 2018
35
December, 2018
28
May, 2019
23
February, 2018
23
February, 2020
23
January, 2019
23
October, 2018
20
April, 2019
19
April, 2020
16
January, 2021
14
May, 2023
11
September, 2017
10
December, 2019
10
November, 2020
10
October, 2017
7
August, 2020
7
January, 2018
5
March, 2019
5
March, 2023
4
October, 2022
3
August, 2018
3
June, 2018
1
August, 2022
Available data
68
bigWig
66
bam
49
tsv
22
bed bedMethyl
22
bigBed bedMethyl
7
bed narrowPeak
3
bed bed3+
3
hdf5
2
bigBed narrowPeak
Organism
90
Homo sapiens
Biosample type
67
tissue
23
primary cell
Organ
25
heart
18
brain
connective tissue
13
epithelium
12
adipose tissue
12
vasculature
11
blood vessel
11
kidney
10
liver
10
musculature of body
6
pancreas
5
limb
3
artery
2
pericardium
1
eye
Project
90
AMP
Genome assembly (visualization)
73
hg19
63
GRCh38
Lab
90
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
organ_slims!
connective tissue
target.investigated_as!
histone
BIOSAMPLE
ASSAY
90 results
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total RNA-seq
small RNA-seq
RRBS
WGBS
Hi-C
ATAC-seq
single cell RNA-seq
FAIRE-seq
tissue
heart left ventricle
2
1
4
2
right lobe of liver
2
2
1
body of pancreas
2
2
gastrocnemius medialis
4
heart
2
1
1
+ See 24 more…
primary cell
cerebellar granule cell
2
epithelial cell of proximal tubule
1
1
kidney epithelial cell
1
1
renal cortical epithelial cell
1
1
skeletal muscle satellite cell
1
1
+ See 13 more…
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