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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
31
ChIP-seq
31
DNase-seq
17
total RNA-seq
4
ATAC-seq
4
small RNA-seq
3
single cell RNA-seq
2
Hi-C
2
RRBS
2
pCHi-C
1
FAIRE-seq
Assay category
36
DNA accessibility
31
DNA binding
24
Transcription
2
3D chromatin structure
2
DNA methylation
Target of assay
187
histone
histone modification
117
narrow histone mark
70
broad histone mark
31
control
3
RNA binding protein
3
transcription factor
Date released
29
June, 2019
18
November, 2017
17
July, 2019
12
February, 2020
9
October, 2019
4
October, 2017
3
May, 2019
2
March, 2020
2
November, 2018
1
February, 2023
Available data
76
bam
54
bigWig
35
bed narrowPeak
35
bigBed narrowPeak
34
bed broadPeak
34
bigBed broadPeak
33
bed bed3+
26
tsv
19
tagAlign
11
fastq
2
bed bedMethyl
2
bigBed bedMethyl
2
hdf5
1
bed bed3
Organism
97
Homo sapiens
Biosample type
81
tissue
16
primary cell
Organ
795
pancreas
688
liver
connective tissue
459
adipose tissue
431
epithelium
324
kidney
291
heart
165
vasculature
160
blood vessel
159
bone element
121
artery
99
brain
73
limb
68
blood
68
bodily fluid
63
musculature of body
58
eye
25
embryo
20
lung
19
nerve
19
spleen
18
ureter
16
skeleton
7
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
97
AMP
Genome assembly (visualization)
48
GRCh38
45
hg19
Lab
97
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
organ_slims!
connective tissue
target.investigated_as!
histone modification
BIOSAMPLE
ASSAY
97 results
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ChIP-seq
DNase-seq
total RNA-seq
ATAC-seq
small RNA-seq
single cell RNA-seq
Hi-C
RRBS
pCHi-C
FAIRE-seq
tissue
brain
3
14
1
1
1
cerebellum (Hemisphere)
2
1
1
1
1
frontal cortex
2
2
1
1
caudate nucleus
2
1
1
temporal lobe
2
1
1
+ See 29 more…
primary cell
astrocyte of the cerebellum
2
1
1
brain microvascular endothelial cell
2
1
1
choroid plexus epithelial cell
2
1
1
cerebellar granule cell
2
Purkinje cell
1
+ See 1 more…
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