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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
197
DNase-seq
65
ChIP-seq
Assay category
197
DNA accessibility
65
DNA binding
Target of assay
49
transcription factor
30
histone
30
histone modification
16
broad histone mark
narrow histone mark
9
RNA binding protein
5
chromatin remodeller
1
other context
1
other post-translational modification
Date released
181
June, 2019
55
November, 2017
9
August, 2017
9
October, 2019
8
November, 2018
Available data
2411
bam
2152
bigWig
1306
bed narrowPeak
1160
fastq
1122
tsv
870
bigBed narrowPeak
284
bed broadPeak
262
bigBed broadPeak
233
bed bed3+
209
tagAlign
161
txt
153
zippedFastqFolder
64
xls
33
bed bedMethyl
33
bigBed bedMethyl
23
hic
22
bedpe bed3+
8
csv
6
bed bed3
4
hdf5
4
tar
3
bed bedgraph
3
cool
2
ibed
1
bedpe
1
vcf
Organism
262
Homo sapiens
Biosample type
174
tissue
53
cell line
35
primary cell
Organ
78
kidney
57
liver
36
limb
35
brain
33
musculature of body
30
heart
20
epithelium
18
ureter
15
vasculature
12
blood vessel
connective tissue
7
pancreas
4
artery
4
eye
4
vein
2
adipose tissue
2
nerve
1
spleen
Project
262
AMP
Genome assembly (visualization)
245
GRCh38
240
hg19
Lab
262
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
Audit category:
8
inconsistent control read length
1
inconsistent assembly
organ_slims!
connective tissue
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
262 results
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DNase-seq
ChIP-seq
tissue
heart
18
muscle of arm
17
brain
14
kidney
13
muscle of leg
13
+ See 38 more…
cell line
HepG2
52
Panc1
1
primary cell
skeletal muscle myoblast
1
8
endothelial cell of umbilical vein
2
2
astrocyte of the cerebellum
1
1
brain microvascular endothelial cell
1
1
choroid plexus epithelial cell
1
1
+ See 14 more…
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