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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
56
ChIP-seq
35
DNase-seq
8
Hi-C
6
total RNA-seq
5
RRBS
2
small RNA-seq
1
ATAC-seq
1
FAIRE-seq
WGBS
1
pCHi-C
1
single cell RNA-seq
1
snATAC-seq
Assay category
56
DNA binding
38
DNA accessibility
9
Transcription
8
3D chromatin structure
5
DNA methylation
Target of assay
48
histone
48
histone modification
29
broad histone mark
19
narrow histone mark
8
control
Date released
43
June, 2019
26
August, 2017
21
October, 2019
9
July, 2019
7
May, 2019
6
March, 2020
2
February, 2020
2
May, 2022
1
January, 2018
Available data
82
bigWig
76
bam
73
bed narrowPeak
60
bigBed narrowPeak
50
bed broadPeak
37
bigBed broadPeak
36
bed bed3+
15
tagAlign
9
tsv
4
hic
3
bed bedMethyl
3
bedpe bed3+
3
bigBed bedMethyl
2
fastq
1
tar
1
txt
Organism
117
Homo sapiens
Biosample type
81
tissue
36
primary cell
Organ
895
pancreas
786
liver
678
connective tissue
485
adipose tissue
477
epithelium
385
heart
354
kidney
286
brain
234
vasculature
228
blood vessel
159
bone element
141
artery
121
limb
95
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
embryo
23
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
117
AMP
Genome assembly (visualization)
90
hg19
64
GRCh38
Lab
117
AMP-T2D consortium
Audit category:
9
inconsistent ontology term
2
audit script error
organ_slims!
embryo
assay_title!
WGBS
BIOSAMPLE
ASSAY
117 results
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ChIP-seq
DNase-seq
Hi-C
total RNA-seq
RRBS
small RNA-seq
ATAC-seq
FAIRE-seq
pCHi-C
single cell RNA-seq
snATAC-seq
tissue
skeletal muscle tissue
22
1
4
1
1
1
1
muscle of leg
7
13
muscle of arm
17
gastrocnemius medialis
4
1
psoas muscle
2
2
1
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primary cell
endothelial cell of umbilical vein
17
2
2
1
skeletal muscle satellite cell
8
1
1
skeletal muscle cell
2
1
1
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