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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1696
ChIP-seq
1045
total RNA-seq
506
ATAC-seq
359
single cell RNA-seq
203
DNase-seq
86
RNA microarray
84
snATAC-seq
69
WGBS
52
pCHi-C
33
Hi-C
20
RRBS
15
small RNA-seq
10
MeRIP-seq
5
FAIRE-seq
5
STARR-seq
4
GRO-seq
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
Capture-C
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
203
DNA accessibility
15
Transcription
Date released
181
June, 2019
15
July, 2019
10
October, 2019
8
November, 2018
4
August, 2017
Available data
215
bam
215
bigWig
200
bed narrowPeak
200
bigBed narrowPeak
197
bed broadPeak
197
bigBed broadPeak
196
bed bed3+
15
tsv
10
fastq
Organism
218
Homo sapiens
Biosample type
190
tissue
26
primary cell
2
cell line
Organ
82
kidney
36
brain
36
limb
35
musculature of body
31
heart
19
epithelium
18
ureter
connective tissue
11
vasculature
10
pancreas
9
blood vessel
9
liver
5
adipose tissue
4
artery
4
eye
2
nerve
2
vein
1
spleen
Project
218
AMP
Genome assembly (visualization)
213
GRCh38
193
hg19
Lab
218
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
organ_slims!
embryo
connective tissue
BIOSAMPLE
ASSAY
218 results
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Clear Filters
DNase-seq
small RNA-seq
tissue
heart
18
1
muscle of arm
17
brain
14
kidney
13
muscle of leg
13
+ See 44 more…
primary cell
kidney tubule cell
3
endothelial cell of umbilical vein
2
glomerular visceral epithelial cell
2
kidney glomerular epithelial cell
2
skeletal muscle myoblast
2
+ See 15 more…
cell line
Panc1
1
glomerular visceral epithelial cell
1
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