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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1631
ChIP-seq
1063
total RNA-seq
376
ATAC-seq
276
single cell RNA-seq
204
DNase-seq
72
snATAC-seq
56
pCHi-C
25
Hi-C
24
WGBS
19
RRBS
16
small RNA-seq
5
STARR-seq
4
GRO-seq
3
CRISPR genome editing followed by DNA sequencing
3
FAIRE-seq
3
RNA microarray
3
snDrop-seq
2
Capture-C
2
HiChIP
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
DNAme array
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
276
Transcription
Target of assay
3
control
Date released
98
August, 2021
47
September, 2023
40
September, 2020
34
May, 2022
13
February, 2021
11
July, 2018
10
April, 2018
9
April, 2020
3
December, 2019
3
July, 2019
3
May, 2023
2
June, 2018
1
February, 2023
1
November, 2018
1
September, 2018
Available data
131
tsv
59
fastq
52
zippedFastqFolder
26
bam
26
bigWig
txt
8
csv
Organism
276
Homo sapiens
Biosample type
161
tissue
113
primary cell
2
in vitro differentiated cells
Organ
93
heart
pancreas
70
epithelium
51
kidney
9
lung
6
blood vessel
6
vasculature
4
connective tissue
3
brain
2
artery
1
liver
1
musculature of body
Project
135
AMP
85
HPAP
47
KPMP
9
LungMap
Genome assembly (visualization)
26
GRCh38
26
hg19
Lab
132
AMP-T2D consortium
85
Klaus Kaestner, Upenn
47
KPMP
9
Xin Sun, UCSD
3
Katalin Susztak, Upenn
Audit category:
4
inconsistent ontology term
2
audit script error
organ_slims!
embryo
pancreas
files.file_type!
txt
BIOSAMPLE
ASSAY
276 results
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single cell RNA-seq
tissue
kidney
51
heart left ventricle
18
left cardiac atrium
18
right cardiac atrium
18
heart right ventricle
17
+ See 13 more…
primary cell
Langerhans cell
85
pancreatic cell
9
mesenchymal cell
6
cerebellar granule cell
2
endothelial cell
2
+ See 5 more…
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
2
See all biosamples
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