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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
660
ChIP-seq
248
total RNA-seq
100
single cell RNA-seq
81
ATAC-seq
31
DNase-seq
5
Hi-C
2
small RNA-seq
1
FAIRE-seq
1
GRO-seq
1
WGBS
Assay category
660
DNA binding
350
Transcription
113
DNA accessibility
5
3D chromatin structure
1
DNA methylation
Target of assay
366
transcription factor
269
histone
269
histone modification
137
broad histone mark
132
narrow histone mark
88
recombinant protein
73
RNA binding protein
31
chromatin remodeller
23
control
2
other context
2
other post-translational modification
Date released
277
November, 2017
176
May, 2021
90
May, 2020
85
February, 2021
72
September, 2018
57
November, 2018
48
July, 2018
47
June, 2019
46
August, 2017
43
April, 2018
43
October, 2019
27
December, 2018
22
July, 2019
20
January, 2019
17
August, 2021
12
November, 2019
7
August, 2020
7
March, 2020
5
December, 2019
5
November, 2020
5
September, 2017
4
May, 2019
3
August, 2018
3
June, 2018
3
September, 2020
2
December, 2017
2
January, 2018
2
October, 2018
Available data
1186
bam
1130
bigWig
840
fastq
701
bed narrowPeak
464
bigBed narrowPeak
385
tsv
153
zippedFastqFolder
120
tagAlign
108
bed broadPeak
108
bigBed broadPeak
43
bed bed3+
11
bed bedMethyl
11
bigBed bedMethyl
8
hic
6
bedpe bed3+
5
hdf5
4
tar
3
cool
2
bed bed3
2
csv
1
txt
1
vcf
Organism
1130
Homo sapiens
Biosample type
tissue
613
primary cell
514
cell line
in vitro differentiated cells
3
stem cell
Organ
343
liver
281
epithelium
248
pancreas
85
vasculature
80
blood vessel
66
heart
58
artery
55
blood
55
bodily fluid
40
kidney
32
connective tissue
20
brain
15
vein
11
musculature of body
embryo
3
eye
2
adipose tissue
1
pericardium
Project
936
AMP
184
T1D
10
HPAP
Genome assembly (visualization)
1107
hg19
967
GRCh38
1
hg18
Lab
891
AMP-T2D consortium
215
Kyle Gaulton, UCSD
14
Bing Ren, UCSD
10
Klaus Kaestner, Upenn
Audit category:
96
inconsistent ontology term
1
inconsistent control
Audit category:
56
missing controlled_by
Audit category:
33
inconsistent control read length
9
inconsistent control run_type
3
inconsistent assembly
organ_slims!
embryo
biosample_type!
in vitro differentiated cells
tissue
BIOSAMPLE
ASSAY
1130 results
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Clear Filters
ChIP-seq
total RNA-seq
single cell RNA-seq
ATAC-seq
DNase-seq
Hi-C
small RNA-seq
FAIRE-seq
GRO-seq
WGBS
primary cell
monocyte
84
53
2
pancreatic alpha cell
7
10
12
13
CD8-positive, alpha-beta T cell
33
4
2
pancreatic beta cell
7
10
12
10
pancreatic ductal cell
13
4
10
4
+ See 73 more…
cell line
HepG2
326
5
1
smooth muscle cell of the coronary artery
4
52
GM12878
54
1
EndoC_BH1
13
33
2
Panc1
6
1
1
+ See 6 more…
stem cell
hESC
2
1
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