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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
158
ChIP-seq
128
total RNA-seq
42
ATAC-seq
5
pCHi-C
4
Hi-C
3
GRO-seq
2
Capture-C
2
single cell RNA-seq
1
DNase-seq
Assay category
158
DNA binding
130
Transcription
43
DNA accessibility
4
3D chromatin structure
Target of assay
87
histone
87
histone modification
45
broad histone mark
43
transcription factor
41
narrow histone mark
28
control
9
RNA binding protein
2
chromatin remodeller
Date released
125
May, 2021
68
August, 2017
42
August, 2021
26
February, 2018
26
February, 2021
16
February, 2023
15
December, 2017
8
March, 2020
8
October, 2019
5
November, 2019
3
January, 2018
2
December, 2019
1
August, 2018
Available data
243
bam
220
bigWig
123
tsv
102
bed narrowPeak
99
fastq
37
tagAlign
22
bed bed3+
7
bed bedgraph
7
bedpe bed3+
5
bed bed3
4
hic
3
bigBed narrowPeak
3
txt
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
345
Homo sapiens
Biosample type
2722
tissue
682
primary cell
575
cell line
345
in vitro differentiated cells
10
stem cell
Organ
97
connective tissue
embryo
epithelium
15
liver
3
pancreas
1
adipose tissue
1
heart
Project
345
AMP
Genome assembly (visualization)
258
hg19
226
GRCh38
3
hg18
Lab
291
AMP-T2D consortium
47
Kyle Gaulton, UCSD
7
Struan F.A. Grant, CHOP
Audit category:
108
inconsistent ontology term
2
audit script error
Audit category:
5
missing controlled_by
Audit category:
14
inconsistent control read length
organ_slims!
embryo
epithelium
BIOSAMPLE
ASSAY
345 results
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ChIP-seq
total RNA-seq
ATAC-seq
pCHi-C
Hi-C
GRO-seq
Capture-C
single cell RNA-seq
DNase-seq
in vitro differentiated cells
adipocyte
67
5
8
1
1
cardiomyocytes
3
59
embryonic stem cell
40
7
6
1
neural progenitor cell
21
7
10
cardiac precursors (cardiac muscle cell)
19
1
1
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