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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
226
ChIP-seq
39
ATAC-seq
29
DNase-seq
4
Hi-C
2
total RNA-seq
1
FAIRE-seq
1
pCHi-C
Assay category
226
DNA binding
69
DNA accessibility
4
3D chromatin structure
2
Transcription
Target of assay
216
histone
216
histone modification
112
broad histone mark
104
narrow histone mark
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
129
May, 2021
47
June, 2019
46
September, 2018
33
August, 2017
21
October, 2019
6
November, 2017
5
September, 2017
4
July, 2019
4
May, 2019
3
August, 2021
2
February, 2021
2
November, 2020
Available data
613
bigWig
609
bam
409
fastq
295
bed narrowPeak
270
tsv
153
zippedFastqFolder
109
bigBed narrowPeak
100
tagAlign
49
bed broadPeak
49
bigBed broadPeak
37
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
1
tar
Organism
302
Homo sapiens
Biosample type
1001
tissue
406
cell line
302
primary cell
128
in vitro differentiated cells
3
stem cell
Organ
108
epithelium
68
pancreas
23
vasculature
22
kidney
19
blood vessel
19
connective tissue
14
brain
13
vein
9
musculature of body
7
liver
6
heart
3
eye
Project
218
AMP
84
T1D
Genome assembly (visualization)
295
hg19
261
GRCh38
Lab
186
AMP-T2D consortium
116
Kyle Gaulton, UCSD
Audit category:
25
inconsistent ontology term
Audit category:
32
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
organ_slims!
embryo
BIOSAMPLE
ASSAY
302 results
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ChIP-seq
ATAC-seq
DNase-seq
Hi-C
total RNA-seq
FAIRE-seq
pCHi-C
primary cell
monocyte
84
13
CD8-positive, alpha-beta T cell
30
2
pancreatic ductal cell
13
4
skeletal muscle myoblast
14
2
pancreatic beta cell
7
7
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