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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
3
ChIP-seq
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
MPRA
1
RNA microarray
1
shRNA RNA-seq
1
siRNA RNA-seq
1
snATAC-seq
Assay category
4
Transcription
3
DNA binding
1
DNA accessibility
Target of assay
6
histone
6
histone modification
broad histone mark
2
narrow histone mark
1
control
Date released
4
March, 2023
3
August, 2017
1
April, 2020
1
August, 2021
1
February, 2023
1
October, 2022
Available data
3
bam
3
fastq
3
tagAlign
2
bed broadPeak
2
bed narrowPeak
2
bigBed narrowPeak
2
bigWig
1
txt
Organism
Homo sapiens
Biosample type
5
tissue
4
cell line
2
stem cell
Organ
4
pancreas
1
adipose tissue
1
connective tissue
1
epithelium
1
lung
Project
6
AMP
4
community
1
LungMap
Genome assembly (visualization)
2
GRCh38
2
hg19
Lab
6
AMP-T2D consortium
4
Anna Gloyn, Oxford
1
Xin Sun, UCSD
organ_slims!
embryo
files.file_type!
bed bed3
target.investigated_as!
broad histone mark
replicates.library.biosample.donor.organism.scientific_name!
Homo sapiens
BIOSAMPLE
ASSAY
11 results
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ChIP-seq
CRISPR RNA-seq
CRISPR genome editing followed by sgRNA sequencing
CRISPRi RNA-seq
MPRA
RNA microarray
shRNA RNA-seq
siRNA RNA-seq
snATAC-seq
tissue
pancreas
3
lung
1
subcutaneous adipose tissue
1
cell line
EndoC-BH1
1
1
EndoC_BH1
1
MIN6
1
stem cell
SB Ad3.1
1
1
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