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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
206
ATAC-seq
83
snATAC-seq
26
DNase-seq
Assay category
559
DNA binding
515
Transcription
315
DNA accessibility
78
DNA methylation
7
3D chromatin structure
1
DNA sequencing
Date released
60
February, 2023
60
May, 2022
55
May, 2020
27
February, 2021
23
June, 2019
16
January, 2021
16
May, 2021
15
October, 2019
11
May, 2023
10
April, 2020
7
August, 2020
6
August, 2021
3
September, 2020
2
March, 2019
1
August, 2017
1
August, 2022
1
July, 2019
1
October, 2017
Available data
122
bed narrowPeak
xls
60
zippedFastqFolder
39
fastq
35
bigWig
26
bam
24
bed broadPeak
23
bed bed3+
23
bigBed broadPeak
23
bigBed narrowPeak
12
tsv
Organism
314
Homo sapiens
Biosample type
181
primary cell
118
tissue
16
cell line
Organ
94
pancreas
73
epithelium
38
heart
36
blood vessel
36
vasculature
35
artery
26
kidney
13
brain
10
lung
8
blood
8
bodily fluid
1
connective tissue
1
eye
1
liver
1
pituitary gland
1
skin of body
Project
179
AMP
97
HPAP
29
T1D
10
LungMap
Genome assembly (visualization)
hg19
377
GRCh38
Lab
160
AMP-T2D consortium
97
Klaus Kaestner, Upenn
29
Kyle Gaulton, UCSD
17
Katalin Susztak, Upenn
10
Xin Sun, UCSD
1
Maike Sander, UCSD
1
Mark McCarthy, Oxford
Audit category:
28
audit script error
22
inconsistent ontology term
organ_slims!
embryo
files.file_type!
xls
assembly!
hg19
BIOSAMPLE
ASSAY
315 results
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Clear Filters
ATAC-seq
snATAC-seq
DNase-seq
primary cell
Langerhans cell
48
pancreatic alpha cell
29
CD4-positive, alpha-beta memory T cell
22
naive thymus-derived CD4-positive, alpha-beta T cell
22
pancreatic beta cell
16
+ See 12 more…
tissue
coronary artery
35
islet of Langerhans
26
7
kidney
11
6
lung
10
pancreas
4
+ See 17 more…
cell line
EndoC_BH1
16
See all biosamples
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