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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
570
ChIP-seq
Assay category
570
DNA binding
Target of assay
570
histone modification
569
histone
472
transcription factor
294
narrow histone mark
274
broad histone mark
267
control
93
RNA binding protein
89
recombinant protein
35
chromatin remodeller
5
other context
5
other post-translational modification
Date released
152
October, 2019
89
May, 2019
72
November, 2017
65
August, 2017
59
April, 2019
30
October, 2018
27
May, 2020
25
December, 2017
13
August, 2021
10
February, 2018
10
November, 2019
7
January, 2019
6
October, 2017
3
March, 2020
2
May, 2021
Available data
628
bigWig
624
bed narrowPeak
570
bam
344
bigBed narrowPeak
223
tagAlign
145
fastq
49
bed broadPeak
20
bed bed3+
14
bigBed broadPeak
1
tagAlign bed3+
Organism
564
Homo sapiens
Biosample type
466
tissue
primary cell
67
in vitro differentiated cells
35
cell line
2
stem cell
Organ
163
brain
79
pancreas
77
liver
59
heart
54
blood vessel
54
vasculature
48
limb
27
epithelium
26
connective tissue
24
nerve
20
artery
20
kidney
embryo
6
musculature of body
6
spleen
1
adipose tissue
1
blood
1
bodily fluid
1
pituitary gland
Project
566
AMP
4
T1D
Genome assembly (visualization)
558
GRCh38
516
hg19
Lab
570
AMP-T2D consortium
Audit category:
14
inconsistent ontology term
Audit category:
8
missing controlled_by
Audit category:
24
inconsistent control read length
1
inconsistent assembly
organ_slims!
embryo
biosample_type!
primary cell
BIOSAMPLE
ASSAY
570 results
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Clear Filters
ChIP-seq
tissue
liver
45
tibial nerve
24
heart left ventricle
23
kidney
20
tibial artery
18
+ See 95 more…
in vitro differentiated cells
adipocyte
25
neural progenitor cell
13
hepatocyte
12
definitive endodermal cell
4
primitive gut cell
4
+ See 5 more…
cell line
HepG2
15
EndoC_BH1
12
Panc1
7
GM12878
1
stem cell
hESC
2
See all biosamples
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