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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
59
total RNA-seq
13
single cell RNA-seq
6
ATAC-seq
1
MPRA
1
snATAC-seq
Assay category
72
Transcription
7
DNA accessibility
Date released
57
August, 2021
9
February, 2021
7
May, 2022
6
February, 2023
1
October, 2022
Available data
3150
bam
2952
bigWig
1742
bed narrowPeak
1438
tsv
1324
fastq
1018
bigBed narrowPeak
395
tagAlign
318
bed broadPeak
281
bigBed broadPeak
264
bed bed3+
153
zippedFastqFolder
76
txt
64
xls
34
bed bedMethyl
34
bigBed bedMethyl
18
hic
16
bedpe bed3+
12
bed bed3
8
csv
6
bed bedgraph
5
hdf5
4
tar
3
cool
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
79
Homo sapiens
Biosample type
73
tissue
6
in vitro differentiated cells
1
cell line
Organ
62
kidney
6
pancreas
4
bone element
4
connective tissue
4
skeleton
1
musculature of body
Project
80
AMP
Genome assembly (visualization)
7
hg19
Lab
57
Katalin Susztak, Upenn
15
AMP-T2D consortium
6
Kyle Gaulton, UCSD
2
Struan F.A. Grant, CHOP
Audit category:
inconsistent ontology term
6
audit script error
organ_slims!
embryo
audit.ERROR.category!
inconsistent ontology term
BIOSAMPLE
ASSAY
80 results
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total RNA-seq
single cell RNA-seq
ATAC-seq
MPRA
snATAC-seq
tissue
kidney
49
13
islet of Langerhans
6
acetabular part of hip bone
1
ilium
1
ischium
1
+ See 2 more…
in vitro differentiated cells
adipocyte
4
Progenitor cell of Hypothalamus (neural progenitor cell)
1
embryonic stem cell
1
cell line
MIN6
1
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