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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
583
ChIP-seq
207
ATAC-seq
176
DNase-seq
4
FAIRE-seq
Assay category
583
DNA binding
387
DNA accessibility
Target of assay
514
histone modification
513
histone
264
narrow histone mark
249
broad histone mark
69
transcription factor
26
RNA binding protein
2
chromatin remodeller
Date released
163
June, 2019
151
October, 2019
93
May, 2019
66
August, 2017
65
April, 2019
64
August, 2021
63
February, 2023
58
November, 2017
45
October, 2018
40
May, 2024
38
May, 2022
36
December, 2017
27
May, 2020
20
November, 2019
13
November, 2018
11
October, 2017
8
February, 2021
7
July, 2019
2
March, 2020
Available data
1883
bam
1756
bigWig
1075
tsv
970
bed narrowPeak
548
bigBed narrowPeak
353
fastq
238
tagAlign
212
bed broadPeak
204
bed bed3+
175
bigBed broadPeak
157
txt
64
xls
23
bed bedMethyl
23
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
964
Homo sapiens
Biosample type
970
tissue
404
cell line
295
primary cell
118
in vitro differentiated cells
2
stem cell
Organ
192
brain
173
heart
153
kidney
123
pancreas
113
liver
100
blood vessel
100
vasculature
92
limb
62
artery
51
musculature of body
30
eye
27
nerve
18
ureter
spleen
13
adipose tissue
13
connective tissue
12
epithelium
8
bone element
8
skeleton
1
pituitary gland
Project
968
AMP
2
T1D
Genome assembly (visualization)
869
GRCh38
763
hg19
Lab
828
AMP-T2D consortium
64
Katalin Susztak, Upenn
40
Patrick T. Ellinor, Broad
20
Karen Mohlke, UNC
18
Kyle Gaulton, UCSD
Audit category:
27
inconsistent control
4
inconsistent ontology term
Audit category:
4
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
organ_slims!
embryo
spleen
BIOSAMPLE
ASSAY
970 results
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Clear Filters
ChIP-seq
ATAC-seq
DNase-seq
FAIRE-seq
tissue
liver
82
20
2
kidney
20
64
13
1
islet of Langerhans
20
37
1
1
coronary artery
3
36
2
left cardiac atrium
40
1
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