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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
161
ChIP-seq
119
total RNA-seq
42
ATAC-seq
5
pCHi-C
4
Hi-C
3
GRO-seq
2
Capture-C
2
single cell RNA-seq
1
DNase-seq
Assay category
161
DNA binding
121
Transcription
43
DNA accessibility
4
3D chromatin structure
Target of assay
90
histone
90
histone modification
47
broad histone mark
46
transcription factor
42
narrow histone mark
25
control
11
RNA binding protein
3
chromatin remodeller
Date released
130
May, 2021
68
August, 2017
42
August, 2021
30
December, 2017
February, 2018
26
February, 2021
16
February, 2023
8
March, 2020
8
October, 2019
5
November, 2019
3
January, 2018
2
December, 2019
1
August, 2018
Available data
237
bam
217
bigWig
114
tsv
108
bed narrowPeak
88
fastq
40
tagAlign
22
bed bed3+
17
bigBed narrowPeak
7
bed bedgraph
7
bedpe bed3+
5
bed bed3
4
hic
3
txt
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
339
Homo sapiens
Biosample type
2737
tissue
1088
primary cell
654
cell line
339
in vitro differentiated cells
10
stem cell
Organ
97
connective tissue
24
epithelium
embryo
15
liver
3
pancreas
1
adipose tissue
1
heart
Project
339
AMP
Genome assembly (visualization)
255
hg19
223
GRCh38
3
hg18
Lab
285
AMP-T2D consortium
47
Kyle Gaulton, UCSD
7
Struan F.A. Grant, CHOP
Audit category:
109
inconsistent ontology term
2
audit script error
Audit category:
5
missing controlled_by
Audit category:
12
inconsistent control read length
organ_slims!
embryo
month_released!
February, 2018
BIOSAMPLE
ASSAY
339 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
pCHi-C
Hi-C
GRO-seq
Capture-C
single cell RNA-seq
DNase-seq
in vitro differentiated cells
adipocyte
67
5
8
1
1
cardiomyocytes
3
59
embryonic stem cell
37
5
6
1
neural progenitor cell
21
7
10
cardiac precursors (cardiac muscle cell)
19
1
1
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