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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
390
ChIP-seq
Assay category
390
DNA binding
Target of assay
321
histone
321
histone modification
174
narrow histone mark
147
broad histone mark
65
control
4
transcription factor
Date released
90
May, 2021
85
August, 2017
78
November, 2017
50
May, 2020
49
October, 2019
24
August, 2021
14
October, 2017
February, 2021
Available data
1548
bam
1371
bigWig
1306
bed narrowPeak
835
fastq
801
bigBed narrowPeak
390
tagAlign
114
bed broadPeak
79
bigBed broadPeak
50
bed bed3+
3
tar
1
tagAlign bed3+
Organism
383
Homo sapiens
Biosample type
238
tissue
100
primary cell
40
in vitro differentiated cells
12
cell line
Organ
118
brain
86
liver
22
connective tissue
19
pancreas
15
musculature of body
8
adipose tissue
7
epithelium
1
pituitary gland
Project
306
AMP
84
T1D
Genome assembly (visualization)
241
GRCh38
233
hg19
Lab
306
AMP-T2D consortium
84
Kyle Gaulton, UCSD
Audit category:
3
inconsistent ontology term
Audit category:
4
missing controlled_by
Audit category:
11
inconsistent control read length
2
inconsistent assembly
organ_slims!
embryo
month_released!
February, 2021
BIOSAMPLE
ASSAY
390 results
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Clear Filters
ChIP-seq
tissue
liver
70
substantia nigra
16
caudate nucleus
15
layer of hippocampus
15
skeletal muscle tissue
15
+ See 43 more…
primary cell
monocyte
84
skeletal muscle myoblast
12
hepatocyte
4
in vitro differentiated cells
neural progenitor cell
20
adipocyte
14
cardiomyocytes
3
pancreatic PP cell
3
cell line
HepG2
12
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