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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
113
ChIP-seq
76
ATAC-seq
9
DNase-seq
7
WGBS
6
snATAC-seq
5
STARR-seq
4
Capture-C
3
Hi-C
1
FAIRE-seq
1
RNA microarray
1
whole genome sequencing assay
Assay category
Transcription
113
DNA binding
92
DNA accessibility
7
DNA methylation
3
3D chromatin structure
1
DNA sequencing
Target of assay
75
transcription factor
22
RNA binding protein
20
histone
20
histone modification
18
control
16
recombinant protein
11
narrow histone mark
9
broad histone mark
7
chromatin remodeller
3
other context
3
other post-translational modification
Date released
406
November, 2017
322
August, 2017
284
October, 2019
218
June, 2019
217
May, 2021
152
February, 2021
151
May, 2020
140
May, 2022
139
August, 2021
120
May, 2019
111
February, 2023
87
November, 2018
81
December, 2017
80
April, 2019
74
October, 2018
49
March, 2020
46
September, 2018
43
July, 2019
41
November, 2019
40
May, 2024
35
December, 2018
25
January, 2019
23
October, 2017
16
January, 2021
15
February, 2018
12
November, 2020
11
May, 2023
11
September, 2017
10
April, 2020
7
August, 2020
7
January, 2018
5
March, 2019
4
October, 2022
3
September, 2020
2
December, 2019
1
August, 2018
1
August, 2022
1
March, 2023
Available data
179
bed narrowPeak
121
bam
112
bigWig
87
fastq
73
bigBed narrowPeak
64
xls
24
tagAlign
14
bed bed3+
9
bed broadPeak
9
bigBed broadPeak
7
bed bedMethyl
7
bigBed bedMethyl
2
bedpe bed3+
2
hic
1
vcf
Organism
225
Homo sapiens
Biosample type
99
tissue
88
cell line
35
in vitro differentiated cells
4
primary cell
Organ
79
liver
73
kidney
15
blood
15
bodily fluid
10
pancreas
9
spleen
6
connective tissue
6
epithelium
2
adipose tissue
2
brain
Project
226
AMP
Genome assembly (visualization)
169
GRCh38
116
hg19
Lab
125
AMP-T2D consortium
71
Katalin Susztak, Upenn
26
Bing Ren, UCSD
4
Struan F.A. Grant, CHOP
Audit category:
3
inconsistent ontology term
Audit category:
3
missing controlled_by
Audit category:
5
inconsistent control read length
4
inconsistent control run_type
organ_slims!
embryo
assay_slims!
Transcription
BIOSAMPLE
ASSAY
226 results
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Clear Filters
ChIP-seq
ATAC-seq
DNase-seq
WGBS
snATAC-seq
STARR-seq
Capture-C
Hi-C
FAIRE-seq
RNA microarray
whole genome sequencing assay
tissue
kidney
64
6
1
spleen
6
1
2
liver
4
2
body of pancreas
2
2
pancreas
2
1
+ See 5 more…
cell line
HepG2
63
1
2
1
1
GM12878
15
EndoC_BH1
2
HEK293T
2
Synthesized DNA
1
in vitro differentiated cells
neural progenitor cell
21
10
adipocyte
1
1
osteoblast
1
1
primary cell
hepatocyte
4
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