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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
106
single cell RNA-seq
74
ATAC-seq
66
total RNA-seq
43
ChIP-seq
6
snATAC-seq
5
STARR-seq
3
Hi-C
2
Capture-C
1
whole genome sequencing assay
Assay category
172
Transcription
80
DNA accessibility
43
DNA binding
3
3D chromatin structure
1
DNA sequencing
Target of assay
20
histone
20
histone modification
12
control
11
narrow histone mark
11
transcription factor
9
broad histone mark
1
RNA binding protein
Date released
406
November, 2017
395
May, 2021
341
May, 2020
310
October, 2019
306
August, 2021
286
August, 2017
260
February, 2021
200
June, 2019
200
May, 2022
191
February, 2023
166
July, 2018
120
May, 2019
90
July, 2019
87
November, 2018
81
December, 2017
80
April, 2019
73
September, 2018
62
March, 2020
60
November, 2019
59
September, 2020
53
October, 2018
47
April, 2018
47
September, 2023
35
December, 2018
30
January, 2019
26
February, 2018
23
February, 2020
22
October, 2017
19
April, 2020
16
January, 2021
14
May, 2023
11
September, 2017
10
December, 2019
10
November, 2020
7
August, 2020
6
January, 2018
5
March, 2019
5
March, 2023
4
October, 2022
3
August, 2018
3
June, 2018
1
August, 2022
Available data
115
tsv
104
bed narrowPeak
64
xls
57
txt
41
bam
37
bigWig
24
tagAlign
3
bed bed3+
2
bedpe bed3+
2
hic
1
vcf
Organism
306
Homo sapiens
Biosample type
228
tissue
38
in vitro differentiated cells
36
cell line
4
primary cell
Organ
130
kidney
92
heart
35
liver
embryo
6
blood vessel
6
epithelium
6
vasculature
connective tissue
4
pancreas
2
artery
1
adipose tissue
Project
306
AMP
Genome assembly (visualization)
97
GRCh38
48
hg19
Lab
142
AMP-T2D consortium
128
Katalin Susztak, Upenn
36
Bing Ren, UCSD
Audit category:
3
inconsistent ontology term
organ_slims!
embryo
connective tissue
BIOSAMPLE
ASSAY
306 results
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Clear Filters
single cell RNA-seq
ATAC-seq
total RNA-seq
ChIP-seq
snATAC-seq
STARR-seq
Hi-C
Capture-C
whole genome sequencing assay
tissue
kidney
8
64
49
6
1
heart left ventricle
18
left cardiac atrium
18
right cardiac atrium
18
heart right ventricle
17
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in vitro differentiated cells
neural progenitor cell
10
7
21
cell line
HepG2
9
18
2
1
1
EndoC_BH1
2
HEK293T
2
Synthesized DNA
1
primary cell
hepatocyte
4
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