Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
106
single cell RNA-seq
74
ATAC-seq
66
total RNA-seq
39
ChIP-seq
6
snATAC-seq
5
STARR-seq
3
Hi-C
1
whole genome sequencing assay
Assay category
172
Transcription
80
DNA accessibility
39
DNA binding
3
3D chromatin structure
1
DNA sequencing
Target of assay
17
histone
17
histone modification
11
control
11
transcription factor
9
narrow histone mark
8
broad histone mark
1
RNA binding protein
Date released
400
November, 2017
369
May, 2021
341
May, 2020
300
August, 2021
275
October, 2019
257
August, 2017
228
February, 2021
180
June, 2019
139
February, 2023
133
July, 2018
120
May, 2022
115
May, 2019
87
November, 2018
80
April, 2019
77
July, 2019
66
December, 2017
56
March, 2020
51
October, 2018
47
September, 2023
44
November, 2019
40
May, 2024
40
September, 2020
35
December, 2018
30
January, 2019
26
February, 2018
23
February, 2020
22
October, 2017
19
April, 2020
16
January, 2021
14
April, 2018
14
May, 2023
12
September, 2018
6
January, 2018
6
September, 2017
5
March, 2019
5
March, 2023
4
December, 2019
4
November, 2020
2
June, 2018
1
August, 2022
1
October, 2022
Available data
115
tsv
101
bed narrowPeak
64
xls
57
txt
37
bam
34
bigWig
20
tagAlign
2
bedpe bed3+
2
hic
1
vcf
Organism
300
Homo sapiens
Biosample type
228
tissue
38
in vitro differentiated cells
34
cell line
Organ
130
kidney
92
heart
35
liver
embryo
6
blood vessel
epithelium
6
vasculature
connective tissue
4
pancreas
2
artery
1
adipose tissue
Project
300
AMP
Genome assembly (visualization)
94
GRCh38
45
hg19
Lab
136
AMP-T2D consortium
128
Katalin Susztak, Upenn
36
Bing Ren, UCSD
Audit category:
1
inconsistent ontology term
organ_slims!
embryo
connective tissue
epithelium
BIOSAMPLE
ASSAY
300 results
search-icon
table-tab-icon
Clear Filters
single cell RNA-seq
ATAC-seq
total RNA-seq
ChIP-seq
snATAC-seq
STARR-seq
Hi-C
whole genome sequencing assay
tissue
kidney
8
64
49
6
1
heart left ventricle
18
left cardiac atrium
18
right cardiac atrium
18
heart right ventricle
17
+ See 10 more…
in vitro differentiated cells
neural progenitor cell
10
7
21
cell line
HepG2
9
18
2
1
1
HEK293T
2
Synthesized DNA
1
See all biosamples
Download