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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
750
total RNA-seq
126
ATAC-seq
84
RNA microarray
61
ChIP-seq
35
pCHi-C
27
snATAC-seq
18
single cell RNA-seq
10
Hi-C
6
WGBS
3
snDrop-seq
Assay category
768
Transcription
153
DNA accessibility
61
DNA binding
10
3D chromatin structure
6
DNA methylation
Target of assay
30
histone
30
histone modification
30
narrow histone mark
26
control
5
transcription factor
Date released
715
February, 2021
411
August, 2017
406
November, 2017
397
May, 2021
341
May, 2020
314
October, 2019
311
August, 2021
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
88
November, 2018
81
December, 2017
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
35
December, 2018
30
January, 2019
26
February, 2018
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
7
August, 2020
7
January, 2018
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
871
bam
831
bigWig
793
tsv
89
txt
58
tagAlign
53
bed narrowPeak
45
fastq
12
bedpe bed3+
10
hic
6
csv
4
bed bedgraph
2
bed bed3
2
bed bed3+
2
ibed
Organism
1120
Homo sapiens
Biosample type
778
tissue
196
primary cell
108
cell line
34
in vitro differentiated cells
4
stem cell
Organ
457
connective tissue
387
adipose tissue
200
liver
150
bone element
73
heart
70
blood vessel
70
vasculature
66
artery
46
pancreas
38
epithelium
10
kidney
8
skeleton
6
limb
5
musculature of body
2
brain
2
intestine
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
lung
1
mammary gland
1
ovary
1
small intestine
1
spleen
1
stomach
1
thymus
1
urinary bladder
1
vein
Project
1023
AMP
52
T1D
45
HPAP
Genome assembly (visualization)
866
hg19
791
GRCh38
Lab
1030
AMP-T2D consortium
45
Klaus Kaestner, Upenn
45
Kyle Gaulton, UCSD
Audit category:
153
inconsistent ontology term
32
audit script error
1
inconsistent replicate
organ_slims!
embryo
BIOSAMPLE
ASSAY
1120 results
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total RNA-seq
ATAC-seq
RNA microarray
ChIP-seq
pCHi-C
snATAC-seq
single cell RNA-seq
Hi-C
WGBS
snDrop-seq
tissue
adipose tissue
381
1
liver
144
50
1
1
1
bone element
84
bone tissue
58
islet of Langerhans
2
2
2
+ See 32 more…
primary cell
Langerhans cell
27
12
naive thymus-derived CD4-positive, alpha-beta T cell
1
22
CD4-positive, alpha-beta memory T cell
22
macrophage
11
pancreatic alpha cell
6
+ See 28 more…
cell line
smooth muscle cell of the coronary artery
52
8
6
EndoC_BH1
28
2
1
HepG2
1
2
early embryonic cell
2
iPSC derived cell line
2
+ See 4 more…
in vitro differentiated cells
cardiac precursors (cardiac muscle cell)
18
adipocyte
4
4
cardiomyocytes (cardiac muscle cell)
1
2
1
lymphocyte of B lineage (iPSC)
1
1
1
embryonic stem cell
1
stem cell
mesenchymal stem cell
1
mesendoderm
1
neural progenitor cell (neural stem cell)
1
trophoblast
1
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