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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
117
total RNA-seq
84
RNA microarray
57
ATAC-seq
4
DNase-seq
2
single cell RNA-seq
1
pCHi-C
Assay category
119
Transcription
61
DNA accessibility
DNA binding
Date released
210
February, 2021
43
February, 2023
3
October, 2019
2
August, 2021
2
February, 2020
2
July, 2019
2
June, 2019
1
May, 2021
Available data
133
bam
117
bigWig
115
tsv
88
txt
57
bed narrowPeak
4
bed bed3
4
bed bed3+
4
bed broadPeak
4
bigBed broadPeak
4
bigBed narrowPeak
Organism
265
Homo sapiens
Biosample type
203
tissue
60
cell line
2
primary cell
Organ
728
pancreas
531
connective tissue
418
adipose tissue
epithelium
302
kidney
259
heart
239
liver
159
bone element
134
vasculature
131
blood vessel
107
artery
68
brain
57
musculature of body
56
eye
56
limb
20
lung
18
ureter
16
skeleton
15
embryo
9
blood
9
bodily fluid
8
nerve
5
spleen
5
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
264
AMP
1
T1D
Genome assembly (visualization)
168
GRCh38
137
hg19
Lab
264
AMP-T2D consortium
1
Kyle Gaulton, UCSD
Audit category:
84
inconsistent ontology term
organ_slims!
epithelium
assay_slims!
DNA binding
BIOSAMPLE
ASSAY
265 results
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total RNA-seq
RNA microarray
ATAC-seq
DNase-seq
single cell RNA-seq
pCHi-C
tissue
bone element
84
bone tissue
58
coronary artery
1
36
2
tibial artery
1
1
2
acetabular part of hip bone
1
1
+ See 12 more…
cell line
smooth muscle cell of the coronary artery
52
8
primary cell
megakaryocyte
1
smooth muscle cell of the coronary artery
1
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