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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
333
ChIP-seq
70
total RNA-seq
9
ATAC-seq
1
DNase-seq
1
Hi-C
1
WGBS
Assay category
333
DNA binding
70
Transcription
10
DNA accessibility
1
3D chromatin structure
1
DNA methylation
Target of assay
308
transcription factor
88
recombinant protein
57
RNA binding protein
28
chromatin remodeller
20
histone
20
histone modification
10
broad histone mark
10
narrow histone mark
2
other context
2
other post-translational modification
Date released
217
November, 2017
66
February, 2021
57
November, 2018
27
December, 2018
20
January, 2019
18
October, 2019
8
August, 2021
2
March, 2020
Available data
414
bam
406
bigWig
343
bed narrowPeak
322
bigBed narrowPeak
321
fastq
70
tsv
45
bed broadPeak
45
bigBed broadPeak
14
tagAlign
2
bed bed3+
1
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
1
hdf5
Organism
415
Homo sapiens
Biosample type
1859
tissue
415
cell line
311
primary cell
245
in vitro differentiated cells
3
stem cell
Organ
268
liver
64
artery
64
blood vessel
64
heart
64
vasculature
55
pancreas
54
blood
54
bodily fluid
epithelium
12
kidney
8
embryo
Project
415
AMP
Genome assembly (visualization)
478
hg19
415
GRCh38
Lab
415
AMP-T2D consortium
Audit category:
10
inconsistent ontology term
1
inconsistent control
1
inconsistent replicate
Audit category:
5
missing controlled_by
Audit category:
22
inconsistent control read length
6
inconsistent control run_type
1
inconsistent assembly
organ_slims!
epithelium
assay_slims!
DNA sequencing
BIOSAMPLE
ASSAY
415 results
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ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
Hi-C
WGBS
cell line
HepG2
261
5
1
1
smooth muscle cell of the coronary artery
4
52
8
GM12878
54
H1-hESC
8
Panc1
6
1
1
RCC 7860 HIF1a re-expression
3
1
RCC 7860 HIF2a over-expression
2
1
RCC 7860 vector
2
1
early embryonic cell
2
iPSC derived cell line
1
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