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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
52
single cell RNA-seq
21
snATAC-seq
7
ATAC-seq
Assay category
52
Transcription
28
DNA accessibility
Date released
54
May, 2022
19
September, 2020
4
February, 2021
3
February, 2023
Available data
3075
bam
2868
bigWig
1666
bed narrowPeak
1444
tsv
1101
fastq
966
bigBed narrowPeak
391
tagAlign
300
bed broadPeak
263
bigBed broadPeak
252
bed bed3+
161
txt
73
zippedFastqFolder
64
xls
30
bed bedMethyl
30
bigBed bedMethyl
18
bedpe bed3+
17
hic
12
bed bed3
8
csv
7
bed bedgraph
3
hdf5
3
tar
2
ibed
1
bedpe
1
tagAlign bed3+
Organism
80
Homo sapiens
Biosample type
73
primary cell
7
in vitro differentiated cells
Organ
epithelium
80
pancreas
4
connective tissue
Project
73
HPAP
7
AMP
Genome assembly (visualization)
7
hg19
Lab
73
Klaus Kaestner, Upenn
4
AMP-T2D consortium
3
Struan F.A. Grant, CHOP
Audit category:
1
inconsistent ontology term
organ_slims!
epithelium
assay_slims!
DNA sequencing
BIOSAMPLE
ASSAY
80 results
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single cell RNA-seq
snATAC-seq
ATAC-seq
primary cell
Langerhans cell
52
21
in vitro differentiated cells
adipocyte
4
Progenitor cell of Hypothalamus (neural progenitor cell)
1
embryonic stem cell
1
neuron cell of Hypothalamus (neuron)
1
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