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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
RNA microarray
55
total RNA-seq
13
single cell RNA-seq
1
MPRA
1
snATAC-seq
Assay category
68
Transcription
1
DNA accessibility
Date released
89
February, 2021
57
August, 2021
February, 2023
7
May, 2022
1
October, 2022
Available data
3075
bam
2865
bigWig
1613
bed narrowPeak
1430
tsv
1062
fastq
966
bigBed narrowPeak
391
tagAlign
300
bed broadPeak
263
bigBed broadPeak
248
bed bed3+
154
txt
73
zippedFastqFolder
64
xls
30
bed bedMethyl
30
bigBed bedMethyl
18
bedpe bed3+
17
hic
8
csv
4
bed bedgraph
3
hdf5
3
tar
2
bed bed3
2
ibed
1
bedpe
1
tagAlign bed3+
Organism
153
Homo sapiens
Biosample type
153
tissue
1
cell line
Organ
84
bone element
62
kidney
6
pancreas
1
musculature of body
Project
154
AMP
Genome assembly (visualization)
1
hg19
Lab
91
AMP-T2D consortium
57
Katalin Susztak, Upenn
6
Kyle Gaulton, UCSD
Audit category:
84
inconsistent ontology term
6
audit script error
organ_slims!
epithelium
assay_slims!
DNA sequencing
month_released!
February, 2023
BIOSAMPLE
ASSAY
154 results
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RNA microarray
total RNA-seq
single cell RNA-seq
MPRA
snATAC-seq
tissue
bone element
84
kidney
49
13
islet of Langerhans
6
skeletal muscle tissue
1
cell line
MIN6
1
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