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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1549
ChIP-seq
1113
total RNA-seq
366
ATAC-seq
285
single cell RNA-seq
185
DNase-seq
86
RNA microarray
73
snATAC-seq
56
pCHi-C
24
WGBS
21
Hi-C
16
small RNA-seq
13
RRBS
5
GRO-seq
5
STARR-seq
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
Capture-C
2
FAIRE-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
185
DNA accessibility
Date released
169
June, 2019
7
November, 2018
4
August, 2017
4
October, 2019
1
November, 2020
Available data
184
bam
184
bed narrowPeak
184
bigBed narrowPeak
184
bigWig
183
bed broadPeak
183
bigBed broadPeak
181
bed bed3+
9
fastq
Organism
185
Homo sapiens
Biosample type
171
tissue
13
primary cell
1
in vitro differentiated cells
Organ
81
kidney
36
limb
33
musculature of body
32
brain
30
heart
epithelium
18
ureter
11
vasculature
9
blood vessel
9
connective tissue
pancreas
6
liver
4
artery
4
eye
2
adipose tissue
2
nerve
2
vein
1
spleen
Project
185
AMP
Genome assembly (visualization)
182
GRCh38
169
hg19
Lab
185
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
organ_slims!
epithelium
pancreas
assay_slims!
DNA sequencing
BIOSAMPLE
ASSAY
185 results
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DNase-seq
tissue
heart
18
muscle of arm
17
brain
14
kidney
13
muscle of leg
13
+ See 37 more…
primary cell
cardiac fibroblast
3
skeletal muscle myoblast
2
astrocyte of the cerebellum
1
astrocyte of the hippocampus
1
brain pericyte
1
+ See 5 more…
in vitro differentiated cells
adipocyte
1
See all biosamples
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