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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
76
ATAC-seq
39
ChIP-seq
6
snATAC-seq
5
STARR-seq
3
Hi-C
2
Capture-C
1
RNA microarray
1
whole genome sequencing assay
Assay category
Transcription
82
DNA accessibility
39
DNA binding
3
3D chromatin structure
1
DNA sequencing
Target of assay
17
histone
17
histone modification
11
control
11
transcription factor
9
narrow histone mark
8
broad histone mark
1
RNA binding protein
Date released
400
November, 2017
293
August, 2017
252
October, 2019
198
June, 2019
197
May, 2021
151
May, 2020
146
February, 2021
133
August, 2021
115
May, 2019
98
February, 2023
87
November, 2018
80
April, 2019
75
December, 2017
74
October, 2018
60
May, 2022
45
March, 2020
35
December, 2018
35
July, 2019
26
November, 2019
25
January, 2019
24
February, 2018
23
October, 2017
16
January, 2021
11
May, 2023
11
September, 2018
10
April, 2020
8
January, 2018
6
November, 2020
6
September, 2017
5
March, 2019
1
August, 2018
1
August, 2022
1
December, 2019
1
March, 2023
1
October, 2022
Available data
103
bed narrowPeak
64
xls
30
bam
29
bigWig
20
tagAlign
2
bed bed3+
2
bedpe bed3+
2
hic
1
vcf
Organism
132
Homo sapiens
Biosample type
73
tissue
35
in vitro differentiated cells
25
cell line
Organ
73
kidney
26
liver
epithelium
5
connective tissue
3
pancreas
1
adipose tissue
Project
133
AMP
Genome assembly (visualization)
87
GRCh38
42
hg19
Lab
71
Katalin Susztak, Upenn
32
AMP-T2D consortium
26
Bing Ren, UCSD
4
Struan F.A. Grant, CHOP
Audit category:
1
inconsistent ontology term
organ_slims!
epithelium
assay_slims!
Transcription
BIOSAMPLE
ASSAY
133 results
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ATAC-seq
ChIP-seq
snATAC-seq
STARR-seq
Hi-C
Capture-C
RNA microarray
whole genome sequencing assay
tissue
kidney
64
6
1
islet of Langerhans
1
subcutaneous adipose tissue
1
in vitro differentiated cells
neural progenitor cell
10
21
adipocyte
1
1
osteoblast
1
1
cell line
HepG2
18
2
1
1
HEK293T
2
Synthesized DNA
1
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