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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
403
ATAC-seq
184
DNase-seq
84
snATAC-seq
4
FAIRE-seq
Assay category
1549
DNA binding
1236
Transcription
675
DNA accessibility
37
DNA methylation
25
3D chromatin structure
1
DNA sequencing
Date released
167
June, 2019
100
May, 2020
83
February, 2023
80
August, 2021
60
May, 2022
44
February, 2021
24
November, 2019
23
October, 2019
18
May, 2021
16
January, 2021
11
May, 2023
10
April, 2020
9
November, 2018
8
July, 2019
7
October, 2017
6
August, 2017
4
March, 2019
2
January, 2018
2
March, 2020
1
August, 2022
Available data
421
bed narrowPeak
333
bam
280
bigWig
188
bigBed narrowPeak
183
bed broadPeak
181
bed bed3+
181
bigBed broadPeak
66
fastq
64
xls
21
zippedFastqFolder
13
tsv
6
bed bed3
4
txt
3
bed bedgraph
Organism
674
Homo sapiens
Biosample type
450
tissue
189
primary cell
25
in vitro differentiated cells
11
cell line
Organ
173
pancreas
163
kidney
epithelium
77
heart
58
vasculature
56
blood vessel
49
artery
44
limb
37
brain
35
musculature of body
connective tissue
32
eye
29
liver
18
ureter
12
bone element
12
skeleton
10
lung
9
blood
9
bodily fluid
8
adipose tissue
3
nerve
3
vein
2
spleen
1
pituitary gland
1
skin of body
Project
588
AMP
48
HPAP
29
T1D
10
LungMap
Genome assembly (visualization)
376
GRCh38
370
hg19
Lab
456
AMP-T2D consortium
81
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
48
Klaus Kaestner, Upenn
20
Karen Mohlke, UNC
10
Xin Sun, UCSD
3
Struan F.A. Grant, CHOP
2
Mark McCarthy, Oxford
1
Bing Ren, UCSD
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
29
audit script error
21
inconsistent ontology term
1
inconsistent replicate
organ_slims!
epithelium
connective tissue
BIOSAMPLE
ASSAY
675 results
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Clear Filters
ATAC-seq
DNase-seq
snATAC-seq
FAIRE-seq
tissue
kidney
75
13
6
1
islet of Langerhans
68
1
7
1
coronary artery
36
2
liver
20
2
heart
18
+ See 55 more…
primary cell
Langerhans cell
48
CD4-positive, alpha-beta memory T cell
22
naive thymus-derived CD4-positive, alpha-beta T cell
22
monocyte
15
macrophage
11
+ See 36 more…
in vitro differentiated cells
neural progenitor cell
10
embryonic stem cell
6
Pancreatic progenitors (progenitor cell of endocrine pancreas)
5
Progenitor cell of Hypothalamus (neural progenitor cell)
1
cardiac precursors (cardiac muscle cell)
1
+ See 2 more…
cell line
smooth muscle cell of the coronary artery
8
GM12878
1
HepG2
1
Panc1
1
See all biosamples
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