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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
233
total RNA-seq
152
single cell RNA-seq
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
389
Transcription
221
DNA accessibility
212
DNA binding
5
3D chromatin structure
1
DNA sequencing
Date released
67
August, 2021
59
May, 2021
59
May, 2022
47
September, 2023
45
May, 2020
44
February, 2023
40
September, 2020
12
February, 2021
9
April, 2020
4
March, 2023
3
May, 2023
Available data
106
tsv
102
bam
98
bigWig
79
fastq
63
txt
52
zippedFastqFolder
2
bed bed3+
Organism
385
Homo sapiens
Biosample type
222
primary cell
149
tissue
11
cell line
5
in vitro differentiated cells
2
stem cell
Organ
107
kidney
66
pancreas
epithelium
29
liver
9
lung
Project
124
HPAP
104
AMP
101
T1D
47
KPMP
9
LungMap
4
community
Genome assembly (visualization)
98
hg19
96
GRCh38
Lab
AMP-T2D consortium
124
Klaus Kaestner, Upenn
115
Kyle Gaulton, UCSD
60
Katalin Susztak, Upenn
47
KPMP
20
Karen Mohlke, UNC
10
Bing Ren, UCSD
9
Xin Sun, UCSD
4
Anna Gloyn, Oxford
Audit category:
4
inconsistent ontology term
organ_slims!
epithelium
month_released!
August, 2017
lab.title!
AMP-T2D consortium
BIOSAMPLE
ASSAY
389 results
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total RNA-seq
single cell RNA-seq
CRISPR RNA-seq
CRISPRi RNA-seq
shRNA RNA-seq
siRNA RNA-seq
primary cell
Langerhans cell
85
monocyte
53
exocrine cell
39
CD8-positive, alpha-beta T cell
4
B cell
2
+ See 22 more…
tissue
kidney
49
58
liver
20
islet of Langerhans
12
lung
9
pancreas
1
cell line
HepG2
9
EndoC-BH1
1
1
in vitro differentiated cells
embryonic stem cell
5
stem cell
SB Ad3.1
1
1
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