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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
117
single cell RNA-seq
99
total RNA-seq
2
small RNA-seq
Assay category
218
Transcription
184
DNA accessibility
66
DNA binding
4
DNA methylation
3
3D chromatin structure
Target of assay
3
control
Date released
May, 2021
47
May, 2020
40
September, 2020
39
February, 2023
33
May, 2022
15
July, 2018
13
February, 2021
13
July, 2019
10
April, 2018
4
November, 2020
2
June, 2018
1
November, 2018
1
September, 2018
Available data
101
fastq
90
bam
90
bigWig
90
tsv
52
zippedFastqFolder
2
csv
Organism
218
Homo sapiens
Biosample type
1186
tissue
218
primary cell
81
cell line
54
in vitro differentiated cells
2
stem cell
Organ
epithelium
155
pancreas
15
connective tissue
6
kidney
5
liver
4
heart
3
brain
2
adipose tissue
2
artery
2
blood vessel
2
musculature of body
2
vasculature
1
pericardium
Project
124
HPAP
49
AMP
45
T1D
Genome assembly (visualization)
90
GRCh38
90
hg19
Lab
124
Klaus Kaestner, Upenn
49
AMP-T2D consortium
45
Kyle Gaulton, UCSD
Audit category:
10
inconsistent ontology term
organ_slims!
epithelium
month_released!
May, 2021
BIOSAMPLE
ASSAY
218 results
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single cell RNA-seq
total RNA-seq
small RNA-seq
primary cell
Langerhans cell
85
exocrine cell
39
pancreatic cell
9
mesenchymal cell
6
osteoblast
5
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