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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
469
ChIP-seq
Assay category
469
DNA binding
81
Transcription
11
DNA accessibility
3
3D chromatin structure
1
DNA methylation
1
DNA sequencing
Target of assay
360
transcription factor
89
recombinant protein
78
control
64
RNA binding protein
30
chromatin remodeller
26
histone
26
histone modification
13
broad histone mark
13
narrow histone mark
2
other context
2
other post-translational modification
Date released
315
November, 2017
60
November, 2018
27
December, 2018
23
October, 2019
18
August, 2021
18
January, 2019
8
February, 2021
Available data
450
bam
420
fastq
398
bigWig
379
bed narrowPeak
353
bigBed narrowPeak
58
bed broadPeak
58
bigBed broadPeak
20
tagAlign
3
tar
Organism
469
Homo sapiens
Biosample type
907
tissue
469
cell line
187
primary cell
176
in vitro differentiated cells
3
stem cell
Organ
378
liver
60
blood
60
bodily fluid
28
pancreas
epithelium
10
kidney
6
artery
6
blood vessel
6
heart
6
vasculature
Project
469
AMP
Genome assembly (visualization)
394
hg19
333
GRCh38
Lab
451
AMP-T2D consortium
18
Bing Ren, UCSD
Audit category:
10
inconsistent ontology term
1
inconsistent control
Audit category:
13
missing controlled_by
Audit category:
26
inconsistent control read length
8
inconsistent control run_type
organ_slims!
epithelium
assay_title!
FAIRE-seq
BIOSAMPLE
ASSAY
469 results
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ChIP-seq
cell line
HepG2
378
GM12878
60
Panc1
13
smooth muscle cell of the coronary artery
6
RCC 7860 HIF1a re-expression
4
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