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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
52
single cell RNA-seq
21
snATAC-seq
17
WGBS
13
RRBS
Assay category
52
Transcription
30
DNA methylation
21
DNA accessibility
Date released
54
May, 2022
19
September, 2020
17
July, 2019
7
November, 2018
6
August, 2017
Available data
3075
bam
2868
bigWig
1666
bed narrowPeak
1444
tsv
1101
fastq
966
bigBed narrowPeak
391
tagAlign
300
bed broadPeak
263
bigBed broadPeak
252
bed bed3+
161
txt
73
zippedFastqFolder
64
xls
30
bed bedMethyl
30
bigBed bedMethyl
18
bedpe bed3+
17
hic
12
bed bed3
8
csv
7
bed bedgraph
3
hdf5
3
tar
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
103
Homo sapiens
Biosample type
77
primary cell
25
tissue
1
cell line
Organ
epithelium
86
pancreas
8
heart
4
kidney
4
musculature of body
3
connective tissue
3
liver
2
adipose tissue
2
brain
2
spleen
2
vasculature
1
blood vessel
1
eye
1
limb
1
pericardium
Project
73
HPAP
30
AMP
Genome assembly (visualization)
17
GRCh38
13
hg19
Lab
73
Klaus Kaestner, Upenn
30
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
organ_slims!
epithelium
assay_title!
MeRIP-seq
BIOSAMPLE
ASSAY
103 results
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single cell RNA-seq
snATAC-seq
WGBS
RRBS
primary cell
Langerhans cell
52
21
cardiac fibroblast
1
cardiac muscle cell
1
skeletal muscle cell
1
skeletal muscle myoblast
1
tissue
heart left ventricle
2
1
pancreas
2
1
adipose tissue
2
body of pancreas
2
heart right ventricle
2
+ See 11 more…
cell line
HepG2
1
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