Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1702
ChIP-seq
1402
total RNA-seq
428
ATAC-seq
293
single cell RNA-seq
193
DNase-seq
86
RNA microarray
84
snATAC-seq
57
pCHi-C
28
WGBS
26
Hi-C
18
small RNA-seq
15
RRBS
5
GRO-seq
5
STARR-seq
4
FAIRE-seq
4
MeRIP-seq
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
Capture-C
2
HiChIP
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
197
DNA accessibility
Date released
173
June, 2019
10
November, 2018
6
August, 2017
5
October, 2019
2
July, 2019
1
November, 2020
Available data
196
bam
196
bed narrowPeak
196
bigBed narrowPeak
196
bigWig
190
bed broadPeak
190
bigBed broadPeak
188
bed bed3+
14
fastq
Organism
197
Homo sapiens
Biosample type
182
tissue
13
primary cell
1
cell line
1
in vitro differentiated cells
Organ
82
kidney
36
limb
33
brain
33
musculature of body
30
heart
epithelium
18
ureter
12
vasculature
10
blood vessel
10
pancreas
9
connective tissue
6
liver
4
artery
4
eye
3
vein
2
adipose tissue
2
nerve
1
spleen
Project
197
AMP
Genome assembly (visualization)
190
GRCh38
179
hg19
Lab
197
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
organ_slims!
epithelium
BIOSAMPLE
ASSAY
197 results
search-icon
table-tab-icon
Clear Filters
DNase-seq
FAIRE-seq
tissue
heart
18
muscle of arm
17
brain
14
kidney
13
1
muscle of leg
13
+ See 40 more…
primary cell
cardiac fibroblast
3
skeletal muscle myoblast
2
astrocyte of the cerebellum
1
astrocyte of the hippocampus
1
brain pericyte
1
+ See 5 more…
cell line
Panc1
1
in vitro differentiated cells
adipocyte
1
See all biosamples
Download