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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1702
ChIP-seq
1402
total RNA-seq
428
ATAC-seq
293
single cell RNA-seq
193
DNase-seq
86
RNA microarray
84
snATAC-seq
57
pCHi-C
28
WGBS
26
Hi-C
18
small RNA-seq
15
RRBS
5
GRO-seq
5
STARR-seq
4
FAIRE-seq
4
MeRIP-seq
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
Capture-C
2
HiChIP
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
15
DNA methylation
4
DNA accessibility
Date released
11
July, 2019
7
August, 2017
1
November, 2018
Available data
13
bed bedMethyl
13
bigBed bedMethyl
6
fastq
4
bam
4
bed narrowPeak
4
bigBed narrowPeak
4
bigWig
Organism
19
Homo sapiens
Biosample type
15
tissue
4
primary cell
Organ
epithelium
5
kidney
5
musculature of body
4
pancreas
3
brain
2
heart
2
liver
2
vasculature
1
blood vessel
1
connective tissue
1
eye
1
pericardium
1
vein
Project
19
AMP
Genome assembly (visualization)
17
hg19
Lab
19
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
organ_slims!
epithelium
BIOSAMPLE
ASSAY
19 results
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RRBS
FAIRE-seq
tissue
skeletal muscle tissue
4
islet of Langerhans
1
1
kidney
1
1
pancreas
1
1
brain
1
+ See 4 more…
primary cell
cardiac fibroblast
1
cardiac muscle cell
1
skeletal muscle cell
1
skeletal muscle myoblast
1
See all biosamples
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