Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1702
ChIP-seq
1402
total RNA-seq
428
ATAC-seq
293
single cell RNA-seq
193
DNase-seq
86
RNA microarray
84
snATAC-seq
57
pCHi-C
28
WGBS
26
Hi-C
18
small RNA-seq
15
RRBS
5
GRO-seq
5
STARR-seq
4
FAIRE-seq
4
MeRIP-seq
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
Capture-C
2
HiChIP
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
277
DNA accessibility
Date released
173
June, 2019
27
February, 2021
22
May, 2022
16
January, 2021
10
April, 2020
9
November, 2018
6
August, 2021
5
August, 2017
5
October, 2019
2
February, 2023
1
August, 2022
1
November, 2020
Available data
192
bam
192
bed narrowPeak
192
bigBed narrowPeak
192
bigWig
190
bed broadPeak
190
bigBed broadPeak
189
bed bed3+
39
fastq
21
zippedFastqFolder
1
txt
Organism
276
Homo sapiens
Biosample type
206
tissue
69
primary cell
1
cell line
1
in vitro differentiated cells
Organ
87
kidney
36
limb
34
musculature of body
32
brain
30
heart
epithelium
19
pancreas
18
ureter
11
vasculature
10
lung
9
blood vessel
9
connective tissue
8
blood
8
bodily fluid
6
liver
4
artery
4
eye
2
adipose tissue
2
nerve
2
vein
1
spleen
Project
201
AMP
48
HPAP
18
T1D
10
LungMap
Genome assembly (visualization)
190
GRCh38
176
hg19
Lab
195
AMP-T2D consortium
48
Klaus Kaestner, Upenn
18
Kyle Gaulton, UCSD
10
Xin Sun, UCSD
6
Katalin Susztak, Upenn
Audit category:
29
audit script error
3
inconsistent ontology term
organ_slims!
epithelium
BIOSAMPLE
ASSAY
277 results
search-icon
table-tab-icon
Clear Filters
DNase-seq
snATAC-seq
tissue
kidney
13
6
heart
18
muscle of arm
17
brain
14
muscle of leg
13
+ See 42 more…
primary cell
Langerhans cell
48
peripheral blood mononuclear cell
8
cardiac fibroblast
3
skeletal muscle myoblast
2
astrocyte of the cerebellum
1
+ See 7 more…
cell line
Panc1
1
in vitro differentiated cells
adipocyte
1
See all biosamples
Download