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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
75
ChIP-seq
5
STARR-seq
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
1
Hi-C
1
MPRA
1
WGBS
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
75
DNA binding
2
Transcription
1
3D chromatin structure
1
DNA methylation
1
DNA sequencing
Target of assay
65
control
9
transcription factor
4
recombinant protein
3
RNA binding protein
1
broad histone mark
1
histone
1
histone modification
Date released
49
November, 2017
10
August, 2021
10
October, 2019
7
November, 2018
5
February, 2023
3
February, 2021
3
January, 2019
2
March, 2023
1
December, 2018
1
October, 2022
Available data
71
bam
60
fastq
tsv
5
bigWig
4
bed narrowPeak
4
bigBed narrowPeak
3
tagAlign
1
bed bedMethyl
1
bigBed bedMethyl
1
txt
1
vcf
Organism
88
Homo sapiens
Biosample type
864
tissue
269
primary cell
91
cell line
89
in vitro differentiated cells
3
stem cell
Organ
61
liver
34
pancreas
epithelium
6
blood
6
bodily fluid
5
kidney
2
artery
2
blood vessel
2
heart
2
vasculature
Project
84
AMP
5
T1D
2
community
Genome assembly (visualization)
hg19
345
GRCh38
Lab
74
AMP-T2D consortium
10
Bing Ren, UCSD
5
Kyle Gaulton, UCSD
2
Anna Gloyn, Oxford
Audit category:
4
inconsistent ontology term
Audit category:
1
missing controlled_by
organ_slims!
epithelium
assembly!
hg19
files.file_type!
tsv
BIOSAMPLE
ASSAY
91 results
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Clear Filters
ChIP-seq
STARR-seq
CRISPR genome editing followed by DNA sequencing
HiChIP
Hi-C
MPRA
WGBS
shRNA RNA-seq
siRNA RNA-seq
whole genome sequencing assay
cell line
HepG2
56
2
1
1
1
Panc1
7
GM12878
6
EndoC_BH1
3
2
EndoC-BH1
1
1
HEK293T
2
smooth muscle cell of the coronary artery
2
MIN6
1
RCC 7860 HIF1a re-expression
1
RCC 7860 HIF2a over-expression
1
RCC 7860 vector
1
Synthesized DNA
1
iPSC derived cell line
1
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