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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
74
ChIP-seq
9
total RNA-seq
4
GRO-seq
3
pCHi-C
2
single cell RNA-seq
Assay category
74
DNA binding
11
Transcription
Target of assay
34
histone
34
histone modification
28
control
20
broad histone mark
14
narrow histone mark
12
transcription factor
5
RNA binding protein
Date released
42
May, 2021
19
August, 2017
9
August, 2021
8
February, 2018
4
February, 2023
4
January, 2018
2
December, 2019
2
March, 2020
1
August, 2018
1
December, 2017
Available data
22
bam
22
tagAlign
19
fastq
5
bigWig
4
tsv
1
bed narrowPeak
1
bedpe bed3+
Organism
92
Homo sapiens
Biosample type
1018
tissue
281
primary cell
104
cell line
92
in vitro differentiated cells
7
stem cell
Organ
24
connective tissue
7
embryo
epithelium
1
adipose tissue
1
liver
1
pancreas
Project
92
AMP
Genome assembly (visualization)
hg19
240
GRCh38
4
hg18
Lab
50
AMP-T2D consortium
42
Kyle Gaulton, UCSD
Audit category:
5
inconsistent ontology term
2
audit script error
Audit category:
missing controlled_by
organ_slims!
epithelium
assembly!
hg19
audit.NOT_COMPLIANT.category!
missing controlled_by
BIOSAMPLE
ASSAY
92 results
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ChIP-seq
total RNA-seq
GRO-seq
pCHi-C
single cell RNA-seq
in vitro differentiated cells
embryonic stem cell
38
5
1
adipocyte
19
1
neural progenitor cell
9
pancreatic endoderm
4
1
cardiomyocytes (cardiac muscle cell)
1
2
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