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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
205
ATAC-seq
83
snATAC-seq
18
DNase-seq
Assay category
538
DNA binding
460
Transcription
306
DNA accessibility
31
DNA methylation
7
3D chromatin structure
1
DNA sequencing
Date released
70
August, 2021
60
February, 2023
55
May, 2020
27
February, 2021
21
May, 2022
17
June, 2019
16
January, 2021
13
October, 2019
11
May, 2023
10
April, 2020
2
March, 2019
1
August, 2017
1
August, 2022
1
July, 2019
1
October, 2017
Available data
116
bed narrowPeak
64
xls
29
fastq
21
zippedFastqFolder
20
bam
19
bigWig
18
bed broadPeak
17
bed bed3+
17
bigBed broadPeak
17
bigBed narrowPeak
12
tsv
Organism
305
Homo sapiens
Biosample type
182
tissue
124
primary cell
Organ
94
pancreas
90
kidney
epithelium
38
heart
36
blood vessel
36
vasculature
35
artery
13
brain
10
lung
8
blood
8
bodily fluid
1
connective tissue
1
eye
1
liver
1
pituitary gland
1
skin of body
Project
219
AMP
48
HPAP
29
T1D
10
LungMap
Genome assembly (visualization)
hg19
388
GRCh38
Lab
136
AMP-T2D consortium
81
Katalin Susztak, Upenn
48
Klaus Kaestner, Upenn
29
Kyle Gaulton, UCSD
10
Xin Sun, UCSD
1
Maike Sander, UCSD
1
Mark McCarthy, Oxford
Audit category:
28
audit script error
6
inconsistent ontology term
organ_slims!
epithelium
assembly!
hg19
month_released!
November, 2020
BIOSAMPLE
ASSAY
306 results
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Clear Filters
ATAC-seq
snATAC-seq
DNase-seq
tissue
kidney
75
6
coronary artery
35
islet of Langerhans
26
7
lung
10
pancreas
4
+ See 17 more…
primary cell
Langerhans cell
48
CD4-positive, alpha-beta memory T cell
22
naive thymus-derived CD4-positive, alpha-beta T cell
22
macrophage
11
peripheral blood mononuclear cell
8
+ See 5 more…
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