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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
87
single cell RNA-seq
67
ATAC-seq
56
snATAC-seq
42
total RNA-seq
15
pCHi-C
7
ChIP-seq
1
DNAme array
1
Hi-C
Assay category
129
Transcription
123
DNA accessibility
7
DNA binding
1
3D chromatin structure
1
DNA methylation
Target of assay
4
histone
4
histone modification
3
control
2
broad histone mark
2
narrow histone mark
Date released
57
May, 2020
54
May, 2022
51
February, 2023
40
September, 2020
39
February, 2021
21
May, 2021
8
January, 2021
3
June, 2019
1
March, 2023
1
November, 2018
1
September, 2018
Available data
102
fastq
73
zippedFastqFolder
12
tsv
3
bam
2
csv
1
hic
Organism
276
Homo sapiens
Biosample type
954
tissue
276
primary cell
105
cell line
69
in vitro differentiated cells
6
stem cell
Organ
epithelium
161
pancreas
11
kidney
8
blood
8
bodily fluid
6
blood vessel
6
vasculature
connective tissue
5
vein
3
heart
2
musculature of body
1
bone element
1
bone marrow
1
eye
1
liver
Project
172
HPAP
80
AMP
23
T1D
1
ITG
Genome assembly (visualization)
hg19
279
GRCh38
Lab
172
Klaus Kaestner, Upenn
80
AMP-T2D consortium
23
Kyle Gaulton, UCSD
1
ITG
Audit category:
27
audit script error
8
inconsistent ontology term
organ_slims!
epithelium
connective tissue
assembly!
hg19
BIOSAMPLE
ASSAY
276 results
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single cell RNA-seq
ATAC-seq
snATAC-seq
total RNA-seq
pCHi-C
ChIP-seq
DNAme array
Hi-C
primary cell
Langerhans cell
85
48
exocrine cell
39
naive thymus-derived CD4-positive, alpha-beta T cell
22
1
1
2
CD4-positive, alpha-beta memory T cell
22
macrophage
11
1
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