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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
40
ChIP-seq
20
total RNA-seq
16
ATAC-seq
11
snATAC-seq
4
MeRIP-seq
4
WGBS
2
DNase-seq
1
Hi-C
1
pCHi-C
Assay category
40
DNA binding
29
DNA accessibility
20
Transcription
4
DNA methylation
1
3D chromatin structure
Target of assay
33
control
9
histone
9
histone modification
5
broad histone mark
4
narrow histone mark
2
nucleotide modification
Date released
18
February, 2023
17
August, 2017
11
October, 2018
10
October, 2019
8
January, 2021
6
May, 2022
4
July, 2018
4
November, 2018
4
November, 2020
4
September, 2017
3
March, 2020
2
August, 2021
2
June, 2019
2
March, 2019
1
August, 2022
1
February, 2020
1
May, 2019
1
May, 2021
Available data
39
bam
27
fastq
6
bigWig
6
txt
4
bed bedMethyl
4
bigBed bedMethyl
4
tagAlign
3
bed broadPeak
3
tsv
2
bed bed3+
2
bed narrowPeak
2
bigBed broadPeak
2
bigBed narrowPeak
1
bedpe bed3+
Organism
98
Homo sapiens
Biosample type
92
tissue
7
cell line
Organ
288
pancreas
225
kidney
epithelium
166
liver
165
heart
122
brain
95
connective tissue
89
bone element
71
blood vessel
71
vasculature
65
adipose tissue
48
artery
27
eye
26
limb
23
musculature of body
20
lung
14
blood
14
bodily fluid
12
nerve
11
spleen
8
embryo
5
gonad
5
ovary
5
vein
4
skeleton
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
71
AMP
28
T1D
Genome assembly (visualization)
hg19
425
GRCh38
Lab
58
AMP-T2D consortium
33
Kyle Gaulton, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Bing Ren, UCSD
1
Maike Sander, UCSD
1
Mark McCarthy, Oxford
Audit category:
1
audit script error
organ_slims!
epithelium
assembly!
hg19
BIOSAMPLE
ASSAY
99 results
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ChIP-seq
total RNA-seq
ATAC-seq
snATAC-seq
MeRIP-seq
WGBS
DNase-seq
Hi-C
pCHi-C
tissue
islet of Langerhans
19
18
16
7
4
1
body of pancreas
9
1
2
2
pancreas
3
1
4
2
1
endocrine pancreas
2
cell line
Panc1
7
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