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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
24
ChIP-seq
15
ATAC-seq
14
total RNA-seq
11
snATAC-seq
4
MeRIP-seq
2
DNase-seq
1
Hi-C
1
pCHi-C
Assay category
28
DNA accessibility
24
DNA binding
14
Transcription
1
3D chromatin structure
Target of assay
17
control
9
histone
9
histone modification
5
broad histone mark
4
narrow histone mark
2
nucleotide modification
Date released
18
February, 2023
14
August, 2017
10
October, 2019
8
January, 2021
4
July, 2018
4
November, 2020
3
March, 2020
2
August, 2021
2
June, 2019
2
October, 2018
1
August, 2022
1
February, 2020
1
March, 2019
1
May, 2019
1
May, 2021
Available data
39
bam
fastq
6
bigWig
6
txt
4
bed bedMethyl
4
bigBed bedMethyl
4
tagAlign
3
bed broadPeak
3
tsv
2
bed bed3+
2
bed narrowPeak
2
bigBed broadPeak
2
bigBed narrowPeak
1
bedpe bed3+
Organism
72
Homo sapiens
Biosample type
65
tissue
7
cell line
Organ
225
kidney
205
heart
180
pancreas
epithelium
118
brain
91
liver
89
bone element
71
blood vessel
71
vasculature
67
connective tissue
48
artery
42
adipose tissue
27
eye
26
limb
23
musculature of body
20
lung
12
nerve
8
blood
8
bodily fluid
5
gonad
5
ovary
5
vein
4
skeleton
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
44
AMP
28
T1D
Genome assembly (visualization)
hg19
225
GRCh38
Lab
38
AMP-T2D consortium
27
Kyle Gaulton, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Bing Ren, UCSD
1
Maike Sander, UCSD
Audit category:
1
audit script error
organ_slims!
epithelium
assembly!
hg19
files.file_type!
fastq
BIOSAMPLE
ASSAY
72 results
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ChIP-seq
ATAC-seq
total RNA-seq
snATAC-seq
MeRIP-seq
DNase-seq
Hi-C
pCHi-C
tissue
islet of Langerhans
14
15
12
7
4
1
pancreas
1
4
1
body of pancreas
1
1
2
endocrine pancreas
2
cell line
Panc1
7
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