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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
137
ChIP-seq
89
total RNA-seq
2
ATAC-seq
2
DNase-seq
2
WGBS
Assay category
137
DNA binding
89
Transcription
4
DNA accessibility
2
DNA methylation
Target of assay
89
histone modification
88
histone
46
transcription factor
44
narrow histone mark
43
broad histone mark
7
RNA binding protein
3
chromatin remodeller
2
control
Date released
542
February, 2021
276
November, 2017
267
May, 2021
232
August, 2017
207
May, 2020
192
June, 2019
184
October, 2019
131
July, 2018
102
August, 2021
92
May, 2019
79
November, 2018
74
July, 2019
64
April, 2019
61
December, 2017
45
October, 2018
44
November, 2019
35
February, 2023
31
February, 2018
30
December, 2018
26
January, 2019
16
April, 2018
14
October, 2017
13
March, 2020
12
May, 2023
11
September, 2018
6
November, 2020
2
June, 2018
2
March, 2019
2
September, 2017
1
March, 2023
Available data
232
bam
232
fastq
230
bigWig
101
bed narrowPeak
89
tsv
35
bigBed narrowPeak
33
bed bed3+
19
bed broadPeak
17
tagAlign
13
bigBed broadPeak
2
bed bedMethyl
2
bigBed bedMethyl
Organism
226
Homo sapiens
Biosample type
158
tissue
49
in vitro differentiated cells
25
primary cell
Organ
152
pancreas
65
connective tissue
19
liver
epithelium
16
adipose tissue
Project
232
AMP
Genome assembly (visualization)
259
hg19
232
GRCh38
Lab
232
AMP-T2D consortium
Audit category:
39
missing controlled_by
Audit category:
12
inconsistent control read length
3
inconsistent assembly
1
inconsistent control run_type
organ_slims!
epithelium
BIOSAMPLE
ASSAY
232 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
WGBS
tissue
islet of Langerhans
21
89
1
liver
18
pancreas
12
white adipose tissue
12
adipose tissue
1
2
+ See 2 more…
in vitro differentiated cells
adipocyte
48
1
primary cell
skeletal muscle myoblast
13
pancreatic endocrine cell
12
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