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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
185
DNase-seq
95
ChIP-seq
2
ATAC-seq
Assay category
187
DNA accessibility
95
DNA binding
Target of assay
50
histone
50
histone modification
45
transcription factor
28
broad histone mark
22
narrow histone mark
5
RNA binding protein
4
chromatin remodeller
1
other context
1
other post-translational modification
Date released
173
June, 2019
53
November, 2017
41
August, 2017
9
November, 2018
October, 2019
4
October, 2017
1
March, 2019
1
November, 2020
Available data
2806
bam
2635
bigWig
1449
bed narrowPeak
1431
tsv
1050
fastq
879
bigBed narrowPeak
331
tagAlign
282
bed broadPeak
245
bigBed broadPeak
236
bed bed3+
161
txt
73
zippedFastqFolder
64
xls
30
bed bedMethyl
30
bigBed bedMethyl
15
bedpe bed3+
14
hic
12
bed bed3
8
csv
7
bed bedgraph
3
tar
2
hdf5
2
ibed
1
bedpe
1
vcf
Organism
276
Homo sapiens
Biosample type
209
tissue
45
cell line
27
primary cell
1
in vitro differentiated cells
Organ
78
kidney
50
liver
47
brain
46
musculature of body
32
limb
30
heart
20
pancreas
epithelium
18
ureter
11
vasculature
10
connective tissue
7
blood vessel
4
eye
3
adipose tissue
2
artery
1
spleen
Project
282
AMP
Genome assembly (visualization)
264
hg19
246
GRCh38
Lab
280
AMP-T2D consortium
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
3
inconsistent ontology term
Audit category:
2
missing controlled_by
Audit category:
inconsistent control read length
2
inconsistent assembly
organ_slims!
epithelium
audit.WARNING.category!
inconsistent control read length
month_released!
October, 2019
BIOSAMPLE
ASSAY
282 results
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DNase-seq
ChIP-seq
ATAC-seq
tissue
heart
18
brain
14
3
muscle of arm
17
kidney
13
muscle of leg
13
+ See 43 more…
cell line
HepG2
45
primary cell
skeletal muscle myoblast
1
13
astrocyte of the cerebellum
1
2
cardiac fibroblast
3
astrocyte of the hippocampus
1
brain pericyte
1
+ See 5 more…
in vitro differentiated cells
adipocyte
1
See all biosamples
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