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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
188
DNase-seq
95
ChIP-seq
2
ATAC-seq
Assay category
190
DNA accessibility
95
DNA binding
Target of assay
50
histone
50
histone modification
45
transcription factor
28
broad histone mark
22
narrow histone mark
5
RNA binding protein
4
chromatin remodeller
1
other context
1
other post-translational modification
Date released
173
June, 2019
53
November, 2017
41
August, 2017
9
November, 2018
4
October, 2017
3
October, 2019
1
March, 2019
1
November, 2020
Available data
2982
bam
2786
bigWig
1590
bed narrowPeak
1439
tsv
1050
fastq
909
bigBed narrowPeak
380
tagAlign
285
bed broadPeak
248
bigBed broadPeak
240
bed bed3+
161
txt
73
zippedFastqFolder
64
xls
30
bed bedMethyl
30
bigBed bedMethyl
18
bedpe bed3+
17
hic
12
bed bed3
8
csv
7
bed bedgraph
3
hdf5
3
tar
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
279
Homo sapiens
Biosample type
211
tissue
46
cell line
27
primary cell
1
in vitro differentiated cells
Organ
78
kidney
50
liver
47
brain
46
musculature of body
36
limb
30
heart
epithelium
21
pancreas
18
ureter
17
vasculature
13
blood vessel
10
connective tissue
4
artery
4
eye
4
vein
3
adipose tissue
nerve
1
spleen
Project
285
AMP
Genome assembly (visualization)
267
hg19
249
GRCh38
Lab
283
AMP-T2D consortium
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
3
inconsistent ontology term
Audit category:
2
missing controlled_by
Audit category:
inconsistent control read length
2
inconsistent assembly
organ_slims!
epithelium
nerve
audit.WARNING.category!
inconsistent control read length
BIOSAMPLE
ASSAY
285 results
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DNase-seq
ChIP-seq
ATAC-seq
tissue
heart
18
brain
14
3
muscle of arm
17
kidney
13
muscle of leg
13
+ See 44 more…
cell line
HepG2
45
Panc1
1
primary cell
skeletal muscle myoblast
1
13
astrocyte of the cerebellum
1
2
cardiac fibroblast
3
astrocyte of the hippocampus
1
brain pericyte
1
+ See 5 more…
in vitro differentiated cells
adipocyte
1
See all biosamples
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