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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
17
Hi-C
Assay category
17
3D chromatin structure
Date released
9
March, 2020
3
October, 2019
2
August, 2021
1
March, 2019
1
March, 2023
1
November, 2019
Available data
2909
bam
2724
bigWig
1524
bed narrowPeak
1444
tsv
1050
fastq
842
bigBed narrowPeak
380
tagAlign
287
bed broadPeak
250
bigBed broadPeak
242
bed bed3+
161
txt
73
zippedFastqFolder
64
xls
30
bed bedMethyl
30
bigBed bedMethyl
18
bedpe bed3+
17
hic
12
bed bed3
8
csv
7
bed bedgraph
3
hdf5
3
tar
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
17
Homo sapiens
Biosample type
11
tissue
4
in vitro differentiated cells
1
cell line
1
primary cell
Organ
7
pancreas
epithelium
3
blood vessel
3
heart
3
vasculature
2
liver
2
musculature of body
2
vein
1
kidney
Project
16
AMP
1
ITG
Genome assembly (visualization)
16
hg19
1
GRCh38
Lab
13
AMP-T2D consortium
2
Bing Ren, UCSD
1
ITG
1
Katalin Susztak, Upenn
Audit category:
4
inconsistent ontology term
organ_slims!
epithelium
audit.WARNING.category!
inconsistent control read length
month_released!
May, 2019
BIOSAMPLE
ASSAY
17 results
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Hi-C
tissue
islet of Langerhans
2
psoas muscle
2
aorta
1
heart
1
heart left ventricle
1
+ See 4 more…
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
2
cardiac precursors (cardiac muscle cell)
1
lymphocyte of B lineage (iPSC)
1
cell line
HepG2
1
primary cell
chondrocytes
1
See all biosamples
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