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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
28
ATAC-seq
21
total RNA-seq
4
pCHi-C
3
DNase-seq
2
ChIP-seq
Assay category
31
DNA accessibility
21
Transcription
2
DNA binding
Target of assay
2
histone
2
histone modification
2
narrow histone mark
Date released
25
February, 2023
21
October, 2019
8
February, 2021
3
June, 2019
1
February, 2020
Available data
26
bed narrowPeak
11
bam
4
bed bed3
4
txt
3
bed bed3+
3
bed broadPeak
3
bigBed broadPeak
3
bigBed narrowPeak
3
bigWig
3
tsv
Organism
58
Homo sapiens
Biosample type
58
tissue
Organ
937
pancreas
764
liver
678
connective tissue
epithelium
491
adipose tissue
393
heart
354
kidney
286
brain
236
vasculature
230
blood vessel
159
bone element
141
artery
122
limb
96
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
34
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
58
AMP
Genome assembly (visualization)
30
hg19
11
GRCh38
Lab
58
AMP-T2D consortium
organ_slims!
epithelium
audit.WARNING.category!
inconsistent control read length
BIOSAMPLE
ASSAY
58 results
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ATAC-seq
total RNA-seq
pCHi-C
DNase-seq
ChIP-seq
tissue
islet of Langerhans
1
14
4
2
retina
15
3
3
acetabular part of hip bone
1
1
ilium
1
1
ischium
1
1
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