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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
417
ATAC-seq
193
DNase-seq
8
snATAC-seq
4
FAIRE-seq
Assay category
1656
DNA binding
1430
Transcription
622
DNA accessibility
44
DNA methylation
25
3D chromatin structure
1
DNA sequencing
Date released
173
June, 2019
100
May, 2020
82
August, 2021
80
February, 2023
39
May, 2022
26
October, 2019
25
November, 2019
22
February, 2021
18
May, 2021
11
May, 2023
10
November, 2018
8
August, 2017
8
July, 2019
8
October, 2017
4
March, 2019
3
January, 2018
2
March, 2020
2
November, 2020
1
August, 2022
Available data
438
bed narrowPeak
347
bam
298
bigWig
201
bigBed narrowPeak
193
bed bed3+
192
bed broadPeak
190
bigBed broadPeak
64
xls
43
fastq
13
tsv
12
bed bed3
7
bed bedgraph
4
txt
Organism
622
Homo sapiens
Biosample type
427
tissue
141
primary cell
43
in vitro differentiated cells
11
cell line
Organ
163
kidney
103
pancreas
77
heart
epithelium
58
vasculature
56
blood vessel
49
artery
44
limb
37
brain
35
musculature of body
34
connective tissue
32
eye
29
liver
18
ureter
12
bone element
12
skeleton
8
adipose tissue
3
nerve
3
vein
2
spleen
1
blood
1
bodily fluid
1
pituitary gland
1
skin of body
Project
622
AMP
48
HPAP
29
T1D
10
LungMap
Genome assembly (visualization)
403
hg19
390
GRCh38
Lab
488
AMP-T2D consortium
81
Katalin Susztak, Upenn
23
Kyle Gaulton, UCSD
20
Karen Mohlke, UNC
5
Struan F.A. Grant, CHOP
2
Mark McCarthy, Oxford
1
Bing Ren, UCSD
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
25
inconsistent ontology term
2
audit script error
1
inconsistent replicate
organ_slims!
epithelium
BIOSAMPLE
ASSAY
622 results
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ATAC-seq
DNase-seq
snATAC-seq
FAIRE-seq
tissue
kidney
75
13
6
1
islet of Langerhans
57
1
1
1
coronary artery
36
2
liver
20
2
heart
18
+ See 58 more…
primary cell
CD4-positive, alpha-beta memory T cell
22
naive thymus-derived CD4-positive, alpha-beta T cell
22
monocyte
15
macrophage
11
cardiac fibroblast
3
+ See 38 more…
in vitro differentiated cells
neural progenitor cell
10
adipocyte
8
1
embryonic stem cell
6
Pancreatic progenitors (progenitor cell of endocrine pancreas)
5
chondrocyte
5
+ See 7 more…
cell line
smooth muscle cell of the coronary artery
8
GM12878
1
HepG2
1
Panc1
1
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