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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
266
ChIP-seq
14
total RNA-seq
2
Hi-C
2
STARR-seq
2
pCHi-C
1
ATAC-seq
1
WGBS
1
whole genome sequencing assay
Assay category
266
DNA binding
Target of assay
210
transcription factor
82
recombinant protein
50
control
39
RNA binding protein
4
chromatin remodeller
3
histone
3
histone modification
2
narrow histone mark
1
broad histone mark
Date released
210
November, 2017
38
November, 2018
18
August, 2021
Available data
248
bam
248
fastq
217
bigWig
208
bed narrowPeak
194
bigBed narrowPeak
4
bed broadPeak
4
bigBed broadPeak
3
tar
Organism
266
Homo sapiens
Biosample type
266
cell line
Organ
266
liver
Project
266
AMP
Genome assembly (visualization)
213
hg19
178
GRCh38
Lab
248
AMP-T2D consortium
18
Bing Ren, UCSD
Audit category:
5
missing controlled_by
Audit category:
3
inconsistent control read length
organ_slims!
epithelium
files.read_length!
36
BIOSAMPLE
ASSAY
266 results
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ChIP-seq
cell line
HepG2
266
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