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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
176
ChIP-seq
Assay category
176
DNA binding
136
Transcription
43
DNA accessibility
4
3D chromatin structure
Target of assay
97
histone
97
histone modification
49
broad histone mark
47
narrow histone mark
46
transcription factor
33
control
9
RNA binding protein
2
chromatin remodeller
Date released
67
August, 2017
40
May, 2021
24
December, 2017
24
February, 2018
21
August, 2021
Available data
124
bam
101
fastq
97
bigWig
92
bed narrowPeak
37
tagAlign
19
bed bed3+
Organism
176
Homo sapiens
Biosample type
867
tissue
469
cell line
187
primary cell
176
in vitro differentiated cells
3
stem cell
Organ
67
connective tissue
22
embryo
epithelium
15
liver
3
pancreas
Project
176
AMP
Genome assembly (visualization)
102
GRCh38
101
hg19
Lab
139
AMP-T2D consortium
37
Kyle Gaulton, UCSD
Audit category:
3
inconsistent ontology term
Audit category:
6
missing controlled_by
Audit category:
16
inconsistent control read length
organ_slims!
epithelium
BIOSAMPLE
ASSAY
176 results
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ChIP-seq
in vitro differentiated cells
adipocyte
67
embryonic stem cell
40
neural progenitor cell
21
pancreatic endoderm
18
definitive endodermal cell
8
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