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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
127
ChIP-seq
Assay category
136
Transcription
127
DNA binding
43
DNA accessibility
4
3D chromatin structure
Target of assay
97
histone
97
histone modification
broad histone mark
47
narrow histone mark
46
transcription factor
33
control
9
RNA binding protein
2
chromatin remodeller
Date released
47
August, 2017
30
May, 2021
20
December, 2017
16
February, 2018
14
August, 2021
Available data
94
bam
77
fastq
67
bigWig
62
bed narrowPeak
23
tagAlign
15
bed bed3+
Organism
127
Homo sapiens
Biosample type
604
tissue
456
cell line
127
in vitro differentiated cells
96
primary cell
2
stem cell
Organ
47
connective tissue
18
embryo
epithelium
8
liver
3
pancreas
Project
127
AMP
Genome assembly (visualization)
72
GRCh38
72
hg19
Lab
100
AMP-T2D consortium
27
Kyle Gaulton, UCSD
Audit category:
3
inconsistent ontology term
Audit category:
6
missing controlled_by
Audit category:
11
inconsistent control read length
organ_slims!
epithelium
target.investigated_as!
broad histone mark
BIOSAMPLE
ASSAY
127 results
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ChIP-seq
in vitro differentiated cells
adipocyte
47
embryonic stem cell
29
neural progenitor cell
14
pancreatic endoderm
14
definitive endodermal cell
6
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